Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2248

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,131,621	+		GFF2247	0.33	-1.1
1,131,717	+		GFF2247	0.43	-0.2
1,131,717	+		GFF2247	0.43	-0.6
1,131,759	+		GFF2247	0.47	+0.3
1,131,759	+		GFF2247	0.47	-0.4
1,131,759	+		GFF2247	0.47	+0.4
1,131,759	+		GFF2247	0.47	-0.4
1,131,759	+		GFF2247	0.47	+0.4
1,131,759	+		GFF2247	0.47	-0.1
1,131,760	-		GFF2247	0.48	+0.7
1,131,760	-		GFF2247	0.48	+0.5
1,131,760	-		GFF2247	0.48	-0.2
1,131,760	-		GFF2247	0.48	-0.1
1,131,760	-		GFF2247	0.48	+0.0
1,131,760	-		GFF2247	0.48	+1.0
1,131,760	-		GFF2247	0.48	+0.1
1,131,765	+		GFF2247	0.48	+0.8
1,131,766	-		GFF2247	0.48	-1.6
1,132,041	+		GFF2247	0.76	+0.5
1,132,042	-		GFF2247	0.76	+0.1
1,132,632	+		GFF2248	0.32	-0.3
1,132,761	+		GFF2248	0.44	+0.3
1,132,761	+		GFF2248	0.44	+0.2
1,132,761	+		GFF2248	0.44	+0.2
1,132,847	+		GFF2248	0.51	+0.8
1,132,847	+		GFF2248	0.51	+0.5
1,132,950	+		GFF2248	0.61	+0.0
1,132,950	+		GFF2248	0.61	+0.5
1,132,950	+		GFF2248	0.61	+0.1
1,132,950	+		GFF2248	0.61	+1.7
1,132,950	+		GFF2248	0.61	+0.6
1,132,951	-		GFF2248	0.61	+0.2
1,132,951	-		GFF2248	0.61	-0.2
1,132,951	-		GFF2248	0.61	+0.8
1,132,951	-		GFF2248	0.61	-0.5
1,132,951	-		GFF2248	0.61	-0.0
1,132,951	-		GFF2248	0.61	-0.3
1,133,124	+		GFF2248	0.77	-0.6
1,133,124	+		GFF2248	0.77	+0.9
1,133,124	+		GFF2248	0.77	-1.3
1,133,163	+		GFF2248	0.80	-0.0
1,133,163	+		GFF2248	0.80	-0.0
1,133,164	-		GFF2248	0.80	+0.1
1,133,164	-		GFF2248	0.80	+0.2
1,133,184	+		GFF2248	0.82	-0.0
1,133,185	-		GFF2248	0.82	-0.6
1,133,185	-		GFF2248	0.82	+0.1
1,133,286	+				-0.2
1,133,343	+				-0.0
1,133,344	-				+1.1
1,133,344	-				-1.0
1,133,379	+				+0.7
1,133,379	+				-0.3
1,133,380	-				+0.1
1,133,380	-				-0.1
1,133,380	-				+0.5
1,133,380	-				+0.4
1,133,439	+				-0.5
1,133,440	-				+0.2
1,133,469	+				-0.3
1,133,493	+				+0.2
1,133,509	-				+0.2
1,133,877	+				+0.5
1,133,878	-				+0.1
1,133,907	-				-0.2
1,134,008	+		GFF2250	0.15	+0.2
1,134,009	-		GFF2250	0.15	+0.7
1,134,009	-		GFF2250	0.15	-0.1
1,134,009	-		GFF2250	0.15	-0.7
1,134,009	-		GFF2250	0.15	+0.4
1,134,009	-		GFF2250	0.15	+0.2