Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2199

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,087,359	+		GFF2198	0.32	+0.9
1,087,359	+		GFF2198	0.32	+0.2
1,087,360	-		GFF2198	0.32	-0.5
1,087,538	+		GFF2198	0.48	+0.2
1,087,539	-		GFF2198	0.48	+1.0
1,087,543	-		GFF2198	0.49	-0.2
1,087,704	+		GFF2198	0.63	+0.1
1,087,875	+		GFF2198	0.79	+0.1
1,087,876	-		GFF2198	0.79	-0.5
1,088,101	-				-1.2
1,088,211	-				+0.2
1,088,211	-				+1.5
1,088,211	-				-0.7
1,088,262	+				-0.1
1,088,262	+				+1.3
1,088,263	-				+0.0
1,088,589	-		GFF2199	0.33	+0.1
1,088,685	-		GFF2199	0.44	+0.3
1,088,685	-		GFF2199	0.44	+0.4
1,088,819	+		GFF2199	0.59	-1.3
1,088,876	+		GFF2199	0.66	+0.1
1,088,876	+		GFF2199	0.66	-0.6
1,088,876	+		GFF2199	0.66	+1.1
1,088,877	-		GFF2199	0.66	-1.3
1,088,877	-		GFF2199	0.66	-0.5
1,088,877	-		GFF2199	0.66	-0.2
1,088,877	-		GFF2199	0.66	+0.0
1,088,877	-		GFF2199	0.66	-0.1
1,088,877	-		GFF2199	0.66	-0.3
1,089,410	-		GFF2200	0.11	+0.3
1,089,605	-		GFF2200	0.21	+0.3
1,089,644	-		GFF2200	0.23	+0.4
1,089,740	-		GFF2200	0.27	+0.7
1,089,740	-		GFF2200	0.27	+0.6