Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2040 and GFF2041 overlap by 4 nucleotides GFF2041 and GFF2042 are separated by 172 nucleotides GFF2042 and GFF2043 overlap by 28 nucleotides
GFF2040 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 920,713 to 922,212
GFF2040
GFF2041 - hypothetical protein, at 922,209 to 922,700
GFF2041
GFF2042 - hypothetical protein, at 922,873 to 922,992
GFF2042
GFF2043 - Glycine/D-amino acid oxidase (deaminating) in putrescine utilization cluster, at 922,965 to 924,266
GFF2043
Position (kb) 922
923 Strain fitness (log2 ratio) -1
0
1 at 921.209 kb on - strand, within GFF2040 at 921.257 kb on - strand, within GFF2040 at 921.257 kb on - strand, within GFF2040 at 921.391 kb on + strand, within GFF2040 at 921.392 kb on - strand, within GFF2040 at 921.508 kb on + strand, within GFF2040 at 921.508 kb on + strand, within GFF2040 at 921.509 kb on - strand, within GFF2040 at 921.509 kb on - strand, within GFF2040 at 921.619 kb on + strand, within GFF2040 at 921.619 kb on + strand, within GFF2040 at 921.620 kb on - strand, within GFF2040 at 921.620 kb on - strand, within GFF2040 at 921.620 kb on - strand, within GFF2040 at 921.632 kb on - strand, within GFF2040 at 921.632 kb on - strand, within GFF2040 at 921.695 kb on - strand, within GFF2040 at 921.722 kb on - strand, within GFF2040 at 921.790 kb on + strand, within GFF2040 at 921.791 kb on - strand, within GFF2040 at 921.791 kb on - strand, within GFF2040 at 921.791 kb on - strand, within GFF2040 at 921.791 kb on - strand, within GFF2040 at 921.791 kb on - strand, within GFF2040 at 921.892 kb on + strand, within GFF2040 at 921.893 kb on - strand, within GFF2040 at 921.894 kb on - strand, within GFF2040 at 922.084 kb on + strand at 922.085 kb on - strand at 922.351 kb on - strand, within GFF2041 at 922.537 kb on - strand, within GFF2041 at 922.698 kb on + strand at 922.698 kb on + strand at 922.699 kb on - strand at 922.699 kb on - strand at 922.699 kb on - strand at 922.966 kb on + strand at 922.966 kb on + strand at 922.966 kb on + strand at 922.966 kb on + strand at 923.065 kb on + strand at 923.065 kb on + strand at 923.065 kb on + strand at 923.066 kb on - strand at 923.066 kb on - strand at 923.066 kb on - strand at 923.066 kb on - strand at 923.066 kb on - strand at 923.164 kb on + strand, within GFF2043 at 923.165 kb on - strand, within GFF2043 at 923.167 kb on + strand, within GFF2043 at 923.167 kb on + strand, within GFF2043 at 923.167 kb on + strand, within GFF2043 at 923.167 kb on + strand, within GFF2043 at 923.167 kb on + strand, within GFF2043 at 923.167 kb on + strand, within GFF2043 at 923.168 kb on - strand, within GFF2043 at 923.168 kb on - strand, within GFF2043 at 923.168 kb on - strand, within GFF2043 at 923.168 kb on - strand, within GFF2043 at 923.329 kb on + strand, within GFF2043 at 923.329 kb on + strand, within GFF2043 at 923.330 kb on - strand, within GFF2043 at 923.330 kb on - strand, within GFF2043 at 923.330 kb on - strand, within GFF2043 at 923.380 kb on + strand, within GFF2043 at 923.381 kb on - strand, within GFF2043 at 923.381 kb on - strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.527 kb on + strand, within GFF2043 at 923.693 kb on - strand, within GFF2043
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 921,209 - GFF2040 0.33 +0.0 921,257 - GFF2040 0.36 +0.1 921,257 - GFF2040 0.36 +0.1 921,391 + GFF2040 0.45 +0.5 921,392 - GFF2040 0.45 +0.3 921,508 + GFF2040 0.53 +0.2 921,508 + GFF2040 0.53 -0.1 921,509 - GFF2040 0.53 +1.0 921,509 - GFF2040 0.53 +0.5 921,619 + GFF2040 0.60 -0.3 921,619 + GFF2040 0.60 -0.8 921,620 - GFF2040 0.60 +0.5 921,620 - GFF2040 0.60 +0.9 921,620 - GFF2040 0.60 -0.3 921,632 - GFF2040 0.61 +0.5 921,632 - GFF2040 0.61 +0.2 921,695 - GFF2040 0.65 +1.2 921,722 - GFF2040 0.67 +0.7 921,790 + GFF2040 0.72 -0.2 921,791 - GFF2040 0.72 +0.3 921,791 - GFF2040 0.72 +0.6 921,791 - GFF2040 0.72 +1.5 921,791 - GFF2040 0.72 +0.1 921,791 - GFF2040 0.72 +1.7 921,892 + GFF2040 0.79 -0.1 921,893 - GFF2040 0.79 +0.9 921,894 - GFF2040 0.79 -0.2 922,084 + +0.1 922,085 - -0.5 922,351 - GFF2041 0.29 -0.8 922,537 - GFF2041 0.67 -0.2 922,698 + -0.1 922,698 + -0.6 922,699 - +0.2 922,699 - +0.8 922,699 - +0.3 922,966 + +0.4 922,966 + +0.7 922,966 + +0.4 922,966 + -0.1 923,065 + -0.1 923,065 + -0.2 923,065 + +0.2 923,066 - -0.7 923,066 - +0.1 923,066 - -0.2 923,066 - +0.6 923,066 - -0.4 923,164 + GFF2043 0.15 -0.7 923,165 - GFF2043 0.15 +1.5 923,167 + GFF2043 0.16 +0.1 923,167 + GFF2043 0.16 +1.3 923,167 + GFF2043 0.16 -0.0 923,167 + GFF2043 0.16 +0.0 923,167 + GFF2043 0.16 +0.3 923,167 + GFF2043 0.16 +0.7 923,168 - GFF2043 0.16 -0.2 923,168 - GFF2043 0.16 -0.1 923,168 - GFF2043 0.16 +0.4 923,168 - GFF2043 0.16 -0.3 923,329 + GFF2043 0.28 -0.0 923,329 + GFF2043 0.28 -0.2 923,330 - GFF2043 0.28 -0.4 923,330 - GFF2043 0.28 -0.9 923,330 - GFF2043 0.28 -0.8 923,380 + GFF2043 0.32 -0.0 923,381 - GFF2043 0.32 +0.0 923,381 - GFF2043 0.32 -1.1 923,473 + GFF2043 0.39 -0.2 923,473 + GFF2043 0.39 +0.7 923,473 + GFF2043 0.39 -1.0 923,473 + GFF2043 0.39 +0.0 923,473 + GFF2043 0.39 -0.2 923,473 + GFF2043 0.39 +1.4 923,473 + GFF2043 0.39 -0.9 923,474 - GFF2043 0.39 +1.0 923,474 - GFF2043 0.39 +0.7 923,474 - GFF2043 0.39 -0.0 923,474 - GFF2043 0.39 -0.0 923,474 - GFF2043 0.39 -0.1 923,474 - GFF2043 0.39 -0.1 923,474 - GFF2043 0.39 +1.0 923,474 - GFF2043 0.39 +1.2 923,474 - GFF2043 0.39 +0.1 923,527 + GFF2043 0.43 -0.0 923,693 - GFF2043 0.56 -0.6
Or see this region's nucleotide sequence