Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2021 and GFF2022 overlap by 4 nucleotides
GFF2021 - FIG00977539: hypothetical protein, at 896,699 to 898,087
GFF2021
GFF2022 - membrane protein, putative, at 898,084 to 900,654
GFF2022
Position (kb) 898
899
900
901 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 897.147 kb on + strand, within GFF2021 at 897.148 kb on - strand, within GFF2021 at 897.148 kb on - strand, within GFF2021 at 897.590 kb on + strand, within GFF2021 at 897.667 kb on - strand, within GFF2021 at 897.714 kb on + strand, within GFF2021 at 897.714 kb on + strand, within GFF2021 at 897.714 kb on + strand, within GFF2021 at 897.715 kb on - strand, within GFF2021 at 897.732 kb on + strand, within GFF2021 at 897.951 kb on + strand at 897.951 kb on + strand at 897.952 kb on - strand at 897.952 kb on - strand at 897.952 kb on - strand at 897.952 kb on - strand at 898.178 kb on + strand at 898.238 kb on + strand at 898.238 kb on + strand at 898.238 kb on + strand at 898.238 kb on + strand at 898.239 kb on - strand at 898.349 kb on + strand, within GFF2022 at 898.350 kb on - strand, within GFF2022 at 898.350 kb on - strand, within GFF2022 at 898.367 kb on + strand, within GFF2022 at 898.368 kb on - strand, within GFF2022 at 898.368 kb on - strand, within GFF2022 at 898.368 kb on - strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.536 kb on - strand, within GFF2022 at 898.536 kb on - strand, within GFF2022 at 898.536 kb on - strand, within GFF2022 at 898.536 kb on - strand, within GFF2022 at 898.536 kb on - strand, within GFF2022 at 898.536 kb on - strand, within GFF2022 at 898.536 kb on - strand, within GFF2022 at 898.536 kb on - strand, within GFF2022 at 898.536 kb on - strand, within GFF2022 at 898.796 kb on + strand, within GFF2022 at 898.796 kb on + strand, within GFF2022 at 898.796 kb on + strand, within GFF2022 at 898.797 kb on - strand, within GFF2022 at 898.826 kb on + strand, within GFF2022 at 898.826 kb on + strand, within GFF2022 at 898.827 kb on - strand, within GFF2022 at 898.827 kb on - strand, within GFF2022 at 898.827 kb on - strand, within GFF2022 at 898.827 kb on - strand, within GFF2022 at 898.827 kb on - strand, within GFF2022 at 898.827 kb on - strand, within GFF2022 at 898.916 kb on + strand, within GFF2022 at 898.916 kb on + strand, within GFF2022 at 898.916 kb on + strand, within GFF2022 at 898.917 kb on - strand, within GFF2022 at 898.917 kb on - strand, within GFF2022 at 898.917 kb on - strand, within GFF2022 at 899.178 kb on - strand, within GFF2022 at 899.216 kb on + strand, within GFF2022 at 899.216 kb on + strand, within GFF2022 at 899.216 kb on + strand, within GFF2022 at 899.216 kb on + strand, within GFF2022 at 899.216 kb on + strand, within GFF2022 at 899.216 kb on + strand, within GFF2022 at 899.216 kb on + strand, within GFF2022 at 899.217 kb on - strand, within GFF2022 at 899.231 kb on + strand, within GFF2022 at 899.232 kb on - strand, within GFF2022 at 899.232 kb on - strand, within GFF2022 at 899.601 kb on + strand, within GFF2022 at 899.601 kb on + strand, within GFF2022 at 899.601 kb on + strand, within GFF2022 at 899.601 kb on + strand, within GFF2022 at 899.762 kb on + strand, within GFF2022 at 899.762 kb on + strand, within GFF2022 at 899.762 kb on + strand, within GFF2022 at 899.763 kb on - strand, within GFF2022 at 899.763 kb on - strand, within GFF2022 at 899.763 kb on - strand, within GFF2022 at 899.763 kb on - strand, within GFF2022 at 899.763 kb on - strand, within GFF2022 at 900.325 kb on + strand, within GFF2022 at 900.325 kb on + strand, within GFF2022 at 900.325 kb on + strand, within GFF2022 at 900.325 kb on + strand, within GFF2022 at 900.325 kb on + strand, within GFF2022 at 900.325 kb on + strand, within GFF2022 at 900.326 kb on - strand, within GFF2022 at 900.326 kb on - strand, within GFF2022 at 900.326 kb on - strand, within GFF2022 at 900.326 kb on - strand, within GFF2022 at 900.326 kb on - strand, within GFF2022 at 900.326 kb on - strand, within GFF2022 at 900.326 kb on - strand, within GFF2022 at 900.326 kb on - strand, within GFF2022 at 900.344 kb on + strand, within GFF2022 at 900.344 kb on + strand, within GFF2022 at 900.398 kb on + strand at 900.398 kb on + strand at 900.399 kb on - strand at 900.399 kb on - strand at 900.419 kb on + strand at 900.419 kb on + strand at 900.420 kb on - strand at 900.420 kb on - strand at 900.437 kb on + strand at 900.438 kb on - strand at 900.438 kb on - strand at 900.438 kb on - strand at 900.438 kb on - strand at 900.438 kb on - strand at 900.515 kb on + strand at 900.515 kb on + strand at 900.515 kb on + strand at 900.516 kb on - strand at 900.516 kb on - strand at 900.587 kb on + strand at 900.587 kb on + strand at 900.587 kb on + strand at 900.587 kb on + strand at 900.587 kb on + strand at 900.587 kb on + strand at 900.588 kb on - strand at 900.588 kb on - strand at 900.588 kb on - strand at 900.588 kb on - strand at 900.588 kb on - strand at 900.588 kb on - strand at 900.588 kb on - strand at 900.588 kb on - strand at 900.588 kb on - strand at 900.588 kb on - strand at 900.588 kb on - strand at 900.663 kb on + strand at 900.663 kb on + strand at 900.663 kb on + strand at 900.664 kb on - strand at 900.719 kb on + strand at 900.719 kb on + strand at 900.719 kb on + strand at 900.719 kb on + strand at 900.719 kb on + strand at 900.719 kb on + strand at 900.720 kb on - strand at 900.720 kb on - strand at 900.720 kb on - strand at 900.720 kb on - strand at 900.720 kb on - strand at 900.720 kb on - strand at 900.720 kb on - strand at 900.720 kb on - strand at 900.910 kb on + strand at 900.910 kb on + strand at 900.910 kb on + strand at 900.910 kb on + strand at 900.910 kb on + strand at 900.910 kb on + strand at 900.911 kb on - strand at 900.911 kb on - strand at 900.970 kb on + strand at 900.970 kb on + strand at 900.970 kb on + strand at 900.970 kb on + strand at 900.971 kb on - strand at 900.971 kb on - strand at 900.971 kb on - strand at 900.971 kb on - strand at 900.971 kb on - strand at 901.009 kb on + strand at 901.010 kb on - strand at 901.026 kb on - strand at 901.033 kb on + strand at 901.033 kb on + strand at 901.033 kb on + strand at 901.033 kb on + strand at 901.033 kb on + strand at 901.033 kb on + strand at 901.033 kb on + strand at 901.034 kb on - strand at 901.034 kb on - strand at 901.034 kb on - strand at 901.034 kb on - strand at 901.117 kb on + strand at 901.117 kb on + strand at 901.118 kb on - strand at 901.118 kb on - strand at 901.118 kb on - strand at 901.378 kb on + strand at 901.378 kb on + strand at 901.378 kb on + strand at 901.378 kb on + strand at 901.378 kb on + strand at 901.378 kb on + strand at 901.378 kb on + strand at 901.378 kb on + strand at 901.378 kb on + strand at 901.379 kb on - strand at 901.379 kb on - strand at 901.379 kb on - strand at 901.379 kb on - strand at 901.379 kb on - strand at 901.379 kb on - strand at 901.379 kb on - strand at 901.379 kb on - strand at 901.519 kb on + strand at 901.519 kb on + strand at 901.519 kb on + strand at 901.519 kb on + strand at 901.519 kb on + strand at 901.520 kb on - strand at 901.520 kb on - strand at 901.637 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 897,147 + GFF2021 0.32 -0.1 897,148 - GFF2021 0.32 +0.2 897,148 - GFF2021 0.32 +0.2 897,590 + GFF2021 0.64 +0.4 897,667 - GFF2021 0.70 +0.0 897,714 + GFF2021 0.73 -0.8 897,714 + GFF2021 0.73 +1.6 897,714 + GFF2021 0.73 -0.8 897,715 - GFF2021 0.73 +2.3 897,732 + GFF2021 0.74 -0.1 897,951 + +0.6 897,951 + -0.4 897,952 - +1.1 897,952 - +0.1 897,952 - -1.3 897,952 - +0.0 898,178 + -0.9 898,238 + -0.1 898,238 + -0.2 898,238 + -0.1 898,238 + -0.7 898,239 - +0.0 898,349 + GFF2022 0.10 +0.7 898,350 - GFF2022 0.10 +0.7 898,350 - GFF2022 0.10 +1.0 898,367 + GFF2022 0.11 +0.0 898,368 - GFF2022 0.11 +0.7 898,368 - GFF2022 0.11 -0.4 898,368 - GFF2022 0.11 +0.6 898,535 + GFF2022 0.18 -0.0 898,535 + GFF2022 0.18 -0.2 898,535 + GFF2022 0.18 -0.7 898,535 + GFF2022 0.18 -0.5 898,535 + GFF2022 0.18 +0.7 898,535 + GFF2022 0.18 -1.4 898,535 + GFF2022 0.18 +1.0 898,535 + GFF2022 0.18 -0.2 898,535 + GFF2022 0.18 +0.7 898,535 + GFF2022 0.18 -0.4 898,536 - GFF2022 0.18 -0.3 898,536 - GFF2022 0.18 -0.8 898,536 - GFF2022 0.18 -0.5 898,536 - GFF2022 0.18 -0.6 898,536 - GFF2022 0.18 +3.3 898,536 - GFF2022 0.18 -0.9 898,536 - GFF2022 0.18 -0.2 898,536 - GFF2022 0.18 +0.2 898,536 - GFF2022 0.18 +0.7 898,796 + GFF2022 0.28 +1.5 898,796 + GFF2022 0.28 -0.0 898,796 + GFF2022 0.28 -0.2 898,797 - GFF2022 0.28 -0.5 898,826 + GFF2022 0.29 -0.2 898,826 + GFF2022 0.29 -0.7 898,827 - GFF2022 0.29 -0.3 898,827 - GFF2022 0.29 -0.1 898,827 - GFF2022 0.29 -0.2 898,827 - GFF2022 0.29 -0.5 898,827 - GFF2022 0.29 -0.4 898,827 - GFF2022 0.29 -0.1 898,916 + GFF2022 0.32 -0.7 898,916 + GFF2022 0.32 -0.2 898,916 + GFF2022 0.32 -0.1 898,917 - GFF2022 0.32 +0.3 898,917 - GFF2022 0.32 +0.9 898,917 - GFF2022 0.32 +0.0 899,178 - GFF2022 0.43 +1.5 899,216 + GFF2022 0.44 -0.9 899,216 + GFF2022 0.44 -0.5 899,216 + GFF2022 0.44 -0.3 899,216 + GFF2022 0.44 -0.1 899,216 + GFF2022 0.44 -0.0 899,216 + GFF2022 0.44 +0.1 899,216 + GFF2022 0.44 -0.2 899,217 - GFF2022 0.44 +0.4 899,231 + GFF2022 0.45 +0.4 899,232 - GFF2022 0.45 -1.8 899,232 - GFF2022 0.45 -0.1 899,601 + GFF2022 0.59 +0.3 899,601 + GFF2022 0.59 -0.7 899,601 + GFF2022 0.59 -0.1 899,601 + GFF2022 0.59 -0.0 899,762 + GFF2022 0.65 -1.3 899,762 + GFF2022 0.65 -0.1 899,762 + GFF2022 0.65 -0.5 899,763 - GFF2022 0.65 +0.3 899,763 - GFF2022 0.65 -0.1 899,763 - GFF2022 0.65 +0.4 899,763 - GFF2022 0.65 +0.1 899,763 - GFF2022 0.65 -0.5 900,325 + GFF2022 0.87 +0.3 900,325 + GFF2022 0.87 +0.1 900,325 + GFF2022 0.87 -2.3 900,325 + GFF2022 0.87 -0.2 900,325 + GFF2022 0.87 -0.4 900,325 + GFF2022 0.87 -0.3 900,326 - GFF2022 0.87 -0.4 900,326 - GFF2022 0.87 -0.1 900,326 - GFF2022 0.87 +0.3 900,326 - GFF2022 0.87 +0.1 900,326 - GFF2022 0.87 +0.2 900,326 - GFF2022 0.87 -0.7 900,326 - GFF2022 0.87 -0.2 900,326 - GFF2022 0.87 +0.0 900,344 + GFF2022 0.88 +0.7 900,344 + GFF2022 0.88 -0.5 900,398 + +0.2 900,398 + -0.3 900,399 - +0.7 900,399 - +0.7 900,419 + -0.3 900,419 + +0.2 900,420 - -0.5 900,420 - -0.1 900,437 + +0.1 900,438 - +1.2 900,438 - +1.7 900,438 - +0.1 900,438 - +0.5 900,438 - +0.4 900,515 + -0.1 900,515 + -0.3 900,515 + +1.5 900,516 - +0.2 900,516 - +0.9 900,587 + -0.1 900,587 + -0.3 900,587 + -0.2 900,587 + -0.6 900,587 + -0.3 900,587 + -0.5 900,588 - +0.5 900,588 - +0.1 900,588 - -1.2 900,588 - -1.4 900,588 - -0.0 900,588 - +0.6 900,588 - -0.4 900,588 - +0.1 900,588 - +0.0 900,588 - +0.3 900,588 - -0.7 900,663 + -0.1 900,663 + +0.7 900,663 + -0.7 900,664 - -0.0 900,719 + -0.1 900,719 + +0.7 900,719 + -0.3 900,719 + +0.2 900,719 + -0.5 900,719 + -0.8 900,720 - -0.4 900,720 - -0.1 900,720 - +0.5 900,720 - -1.3 900,720 - -0.5 900,720 - +0.4 900,720 - -0.0 900,720 - +0.2 900,910 + +0.1 900,910 + -0.7 900,910 + +0.1 900,910 + -0.5 900,910 + +0.1 900,910 + +0.6 900,911 - +0.2 900,911 - +0.1 900,970 + -0.2 900,970 + +0.6 900,970 + -0.7 900,970 + +1.3 900,971 - -0.6 900,971 - +0.0 900,971 - +0.3 900,971 - -0.3 900,971 - -0.5 901,009 + +1.4 901,010 - -0.3 901,026 - +0.9 901,033 + -0.1 901,033 + -1.9 901,033 + +0.1 901,033 + -0.1 901,033 + +1.3 901,033 + +0.3 901,033 + +0.2 901,034 - +0.2 901,034 - +0.0 901,034 - +0.0 901,034 - +0.0 901,117 + -0.3 901,117 + +1.1 901,118 - +0.7 901,118 - +0.5 901,118 - -0.1 901,378 + +0.0 901,378 + +1.1 901,378 + +0.5 901,378 + +1.5 901,378 + +0.6 901,378 + +0.0 901,378 + -0.1 901,378 + +0.6 901,378 + +0.4 901,379 - -0.2 901,379 - +0.2 901,379 - +1.0 901,379 - -0.1 901,379 - +0.4 901,379 - -0.6 901,379 - +0.2 901,379 - +0.7 901,519 + -0.5 901,519 + +0.1 901,519 + -1.3 901,519 + -0.9 901,519 + +0.3 901,520 - +0.3 901,520 - -0.4 901,637 + +0.7
Or see this region's nucleotide sequence