Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1992 and GFF1993 overlap by 4 nucleotides GFF1993 and GFF1994 overlap by 4 nucleotides GFF1994 and GFF1995 are separated by 3 nucleotides GFF1995 and GFF1996 overlap by 4 nucleotides
GFF1992 - Transcriptional regulator, TetR family, at 869,669 to 870,406
GFF1992
GFF1993 - putative extracellular solute-binding protein, at 870,403 to 871,347
GFF1993
GFF1994 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 871,344 to 872,117
GFF1994
GFF1995 - Alkanesulfonates transport system permease protein, at 872,121 to 872,870
GFF1995
GFF1996 - Alkanesulfonates transport system permease protein, at 872,867 to 873,640
GFF1996
Position (kb) 871
872
873 Strain fitness (log2 ratio) -1
0
1
2 at 870.502 kb on + strand, within GFF1993 at 870.554 kb on - strand, within GFF1993 at 870.667 kb on + strand, within GFF1993 at 870.667 kb on + strand, within GFF1993 at 870.667 kb on + strand, within GFF1993 at 870.668 kb on - strand, within GFF1993 at 870.668 kb on - strand, within GFF1993 at 870.668 kb on - strand, within GFF1993 at 870.880 kb on + strand, within GFF1993 at 870.881 kb on - strand, within GFF1993 at 870.881 kb on - strand, within GFF1993 at 870.881 kb on - strand, within GFF1993 at 871.007 kb on - strand, within GFF1993 at 871.007 kb on - strand, within GFF1993 at 871.018 kb on + strand, within GFF1993 at 871.021 kb on + strand, within GFF1993 at 871.021 kb on + strand, within GFF1993 at 871.021 kb on + strand, within GFF1993 at 871.192 kb on + strand, within GFF1993 at 871.192 kb on + strand, within GFF1993 at 871.193 kb on - strand, within GFF1993 at 871.193 kb on - strand, within GFF1993 at 871.193 kb on - strand, within GFF1993 at 871.193 kb on - strand, within GFF1993 at 871.193 kb on - strand, within GFF1993 at 871.273 kb on + strand at 871.273 kb on + strand at 871.358 kb on + strand at 871.947 kb on + strand, within GFF1994 at 871.947 kb on + strand, within GFF1994 at 871.947 kb on + strand, within GFF1994 at 871.948 kb on - strand, within GFF1994 at 872.097 kb on + strand at 872.097 kb on + strand at 872.098 kb on - strand at 872.098 kb on - strand at 872.098 kb on - strand at 872.098 kb on - strand at 872.104 kb on - strand at 872.104 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 870,502 + GFF1993 0.10 +0.3 870,554 - GFF1993 0.16 -0.1 870,667 + GFF1993 0.28 +0.1 870,667 + GFF1993 0.28 -0.4 870,667 + GFF1993 0.28 -0.1 870,668 - GFF1993 0.28 +1.1 870,668 - GFF1993 0.28 +0.5 870,668 - GFF1993 0.28 +0.1 870,880 + GFF1993 0.50 +0.2 870,881 - GFF1993 0.51 +0.4 870,881 - GFF1993 0.51 -0.1 870,881 - GFF1993 0.51 -0.1 871,007 - GFF1993 0.64 +0.0 871,007 - GFF1993 0.64 +0.1 871,018 + GFF1993 0.65 +0.6 871,021 + GFF1993 0.65 +0.3 871,021 + GFF1993 0.65 +0.4 871,021 + GFF1993 0.65 -0.3 871,192 + GFF1993 0.83 +0.1 871,192 + GFF1993 0.83 +0.1 871,193 - GFF1993 0.84 +2.1 871,193 - GFF1993 0.84 -0.3 871,193 - GFF1993 0.84 -0.1 871,193 - GFF1993 0.84 +0.9 871,193 - GFF1993 0.84 +0.2 871,273 + +0.1 871,273 + +1.1 871,358 + +0.8 871,947 + GFF1994 0.78 +1.0 871,947 + GFF1994 0.78 +1.3 871,947 + GFF1994 0.78 -0.4 871,948 - GFF1994 0.78 -0.0 872,097 + -0.1 872,097 + -0.0 872,098 - -1.1 872,098 - +0.6 872,098 - +0.2 872,098 - -0.0 872,104 - -0.1 872,104 - -0.7
Or see this region's nucleotide sequence