Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1860 and GFF1861 overlap by 4 nucleotides GFF1861 and GFF1862 are separated by 14 nucleotides GFF1862 and GFF1863 overlap by 4 nucleotides GFF1863 and GFF1864 overlap by 4 nucleotides
GFF1860 - Radical SAM, at 723,938 to 724,741
GFF1860
GFF1861 - identified by sequence similarity; putative; ORF located using Blastx/Glimmer, at 724,738 to 725,712
GFF1861
GFF1862 - Probable glycosyltransferase, at 725,727 to 726,494
GFF1862
GFF1863 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 726,491 to 727,435
GFF1863
GFF1864 - Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-), at 727,432 to 727,992
GFF1864
Position (kb) 725
726
727 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 724.777 kb on + strand at 724.777 kb on + strand at 724.777 kb on + strand at 724.777 kb on + strand at 724.777 kb on + strand at 724.777 kb on + strand at 724.777 kb on + strand at 724.777 kb on + strand at 724.777 kb on + strand at 724.777 kb on + strand at 724.777 kb on + strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.907 kb on - strand, within GFF1861 at 724.975 kb on + strand, within GFF1861 at 724.975 kb on + strand, within GFF1861 at 724.975 kb on + strand, within GFF1861 at 724.975 kb on + strand, within GFF1861 at 724.976 kb on - strand, within GFF1861 at 725.008 kb on + strand, within GFF1861 at 725.008 kb on + strand, within GFF1861 at 725.008 kb on + strand, within GFF1861 at 725.008 kb on + strand, within GFF1861 at 725.008 kb on + strand, within GFF1861 at 725.008 kb on + strand, within GFF1861 at 725.008 kb on + strand, within GFF1861 at 725.008 kb on + strand, within GFF1861 at 725.008 kb on + strand, within GFF1861 at 725.008 kb on + strand, within GFF1861 at 725.008 kb on + strand, within GFF1861 at 725.008 kb on + strand, within GFF1861 at 725.008 kb on + strand, within GFF1861 at 725.008 kb on + strand, within GFF1861 at 725.009 kb on - strand, within GFF1861 at 725.009 kb on - strand, within GFF1861 at 725.009 kb on - strand, within GFF1861 at 725.009 kb on - strand, within GFF1861 at 725.009 kb on - strand, within GFF1861 at 725.009 kb on - strand, within GFF1861 at 725.009 kb on - strand, within GFF1861 at 725.009 kb on - strand, within GFF1861 at 725.009 kb on - strand, within GFF1861 at 725.009 kb on - strand, within GFF1861 at 725.009 kb on - strand, within GFF1861 at 725.047 kb on + strand, within GFF1861 at 725.047 kb on + strand, within GFF1861 at 725.047 kb on + strand, within GFF1861 at 725.047 kb on + strand, within GFF1861 at 725.047 kb on + strand, within GFF1861 at 725.047 kb on + strand, within GFF1861 at 725.047 kb on + strand, within GFF1861 at 725.048 kb on - strand, within GFF1861 at 725.048 kb on - strand, within GFF1861 at 725.048 kb on - strand, within GFF1861 at 725.048 kb on - strand, within GFF1861 at 725.048 kb on - strand, within GFF1861 at 725.071 kb on + strand, within GFF1861 at 725.071 kb on + strand, within GFF1861 at 725.071 kb on + strand, within GFF1861 at 725.071 kb on + strand, within GFF1861 at 725.072 kb on - strand, within GFF1861 at 725.072 kb on - strand, within GFF1861 at 725.072 kb on - strand, within GFF1861 at 725.072 kb on - strand, within GFF1861 at 725.072 kb on - strand, within GFF1861 at 725.072 kb on - strand, within GFF1861 at 725.263 kb on + strand, within GFF1861 at 725.263 kb on + strand, within GFF1861 at 725.263 kb on + strand, within GFF1861 at 725.263 kb on + strand, within GFF1861 at 725.263 kb on + strand, within GFF1861 at 725.263 kb on + strand, within GFF1861 at 725.263 kb on + strand, within GFF1861 at 725.263 kb on + strand, within GFF1861 at 725.263 kb on + strand, within GFF1861 at 725.263 kb on + strand, within GFF1861 at 725.263 kb on + strand, within GFF1861 at 725.263 kb on + strand, within GFF1861 at 725.264 kb on - strand, within GFF1861 at 725.264 kb on - strand, within GFF1861 at 725.264 kb on - strand, within GFF1861 at 725.264 kb on - strand, within GFF1861 at 725.264 kb on - strand, within GFF1861 at 725.264 kb on - strand, within GFF1861 at 725.264 kb on - strand, within GFF1861 at 725.264 kb on - strand, within GFF1861 at 725.264 kb on - strand, within GFF1861 at 725.264 kb on - strand, within GFF1861 at 725.302 kb on + strand, within GFF1861 at 725.302 kb on + strand, within GFF1861 at 725.303 kb on - strand, within GFF1861 at 725.303 kb on - strand, within GFF1861 at 725.303 kb on - strand, within GFF1861 at 725.303 kb on - strand, within GFF1861 at 725.303 kb on - strand, within GFF1861 at 725.380 kb on + strand, within GFF1861 at 725.380 kb on + strand, within GFF1861 at 725.380 kb on + strand, within GFF1861 at 725.380 kb on + strand, within GFF1861 at 725.380 kb on + strand, within GFF1861 at 725.381 kb on - strand, within GFF1861 at 725.389 kb on + strand, within GFF1861 at 725.389 kb on + strand, within GFF1861 at 725.389 kb on + strand, within GFF1861 at 725.389 kb on + strand, within GFF1861 at 725.389 kb on + strand, within GFF1861 at 725.390 kb on - strand, within GFF1861 at 725.390 kb on - strand, within GFF1861 at 725.390 kb on - strand, within GFF1861 at 725.390 kb on - strand, within GFF1861 at 725.390 kb on - strand, within GFF1861 at 725.390 kb on - strand, within GFF1861 at 725.449 kb on + strand, within GFF1861 at 725.449 kb on + strand, within GFF1861 at 725.449 kb on + strand, within GFF1861 at 725.449 kb on + strand, within GFF1861 at 725.449 kb on + strand, within GFF1861 at 725.449 kb on + strand, within GFF1861 at 725.450 kb on - strand, within GFF1861 at 725.450 kb on - strand, within GFF1861 at 725.450 kb on - strand, within GFF1861 at 725.450 kb on - strand, within GFF1861 at 725.509 kb on + strand, within GFF1861 at 725.509 kb on + strand, within GFF1861 at 725.509 kb on + strand, within GFF1861 at 725.509 kb on + strand, within GFF1861 at 725.509 kb on + strand, within GFF1861 at 725.509 kb on + strand, within GFF1861 at 725.509 kb on + strand, within GFF1861 at 725.509 kb on + strand, within GFF1861 at 725.509 kb on + strand, within GFF1861 at 725.509 kb on + strand, within GFF1861 at 725.510 kb on - strand, within GFF1861 at 725.510 kb on - strand, within GFF1861 at 725.510 kb on - strand, within GFF1861 at 725.510 kb on - strand, within GFF1861 at 725.510 kb on - strand, within GFF1861 at 725.510 kb on - strand, within GFF1861 at 725.510 kb on - strand, within GFF1861 at 725.510 kb on - strand, within GFF1861 at 725.510 kb on - strand, within GFF1861 at 725.542 kb on + strand, within GFF1861 at 725.543 kb on - strand, within GFF1861 at 725.551 kb on + strand, within GFF1861 at 725.551 kb on + strand, within GFF1861 at 725.552 kb on - strand, within GFF1861 at 725.552 kb on - strand, within GFF1861 at 725.552 kb on - strand, within GFF1861 at 725.552 kb on - strand, within GFF1861 at 725.552 kb on - strand, within GFF1861 at 725.552 kb on - strand, within GFF1861 at 725.552 kb on - strand, within GFF1861 at 725.707 kb on + strand at 725.708 kb on - strand at 725.943 kb on + strand, within GFF1862 at 725.943 kb on + strand, within GFF1862 at 725.943 kb on + strand, within GFF1862 at 725.943 kb on + strand, within GFF1862 at 725.943 kb on + strand, within GFF1862 at 725.943 kb on + strand, within GFF1862 at 725.943 kb on - strand, within GFF1862 at 725.944 kb on - strand, within GFF1862 at 725.944 kb on - strand, within GFF1862 at 725.944 kb on - strand, within GFF1862 at 725.944 kb on - strand, within GFF1862 at 725.944 kb on - strand, within GFF1862 at 725.944 kb on - strand, within GFF1862 at 725.944 kb on - strand, within GFF1862 at 726.015 kb on + strand, within GFF1862 at 726.016 kb on - strand, within GFF1862 at 726.016 kb on - strand, within GFF1862 at 726.016 kb on - strand, within GFF1862 at 726.016 kb on - strand, within GFF1862 at 726.171 kb on + strand, within GFF1862 at 726.171 kb on + strand, within GFF1862 at 726.171 kb on + strand, within GFF1862 at 726.171 kb on + strand, within GFF1862 at 726.172 kb on - strand, within GFF1862 at 726.172 kb on - strand, within GFF1862 at 726.249 kb on + strand, within GFF1862 at 726.250 kb on - strand, within GFF1862 at 726.250 kb on - strand, within GFF1862 at 726.459 kb on + strand at 726.740 kb on + strand, within GFF1863 at 726.740 kb on + strand, within GFF1863 at 726.740 kb on + strand, within GFF1863 at 726.741 kb on - strand, within GFF1863 at 726.741 kb on - strand, within GFF1863 at 726.995 kb on + strand, within GFF1863 at 726.995 kb on + strand, within GFF1863 at 726.995 kb on + strand, within GFF1863 at 726.995 kb on + strand, within GFF1863 at 726.995 kb on + strand, within GFF1863 at 726.995 kb on + strand, within GFF1863 at 726.995 kb on + strand, within GFF1863 at 726.996 kb on - strand, within GFF1863 at 726.996 kb on - strand, within GFF1863 at 726.996 kb on - strand, within GFF1863 at 726.996 kb on - strand, within GFF1863 at 726.996 kb on - strand, within GFF1863 at 726.997 kb on - strand, within GFF1863
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 724,777 + -5.8 724,777 + -3.2 724,777 + -6.9 724,777 + -2.1 724,777 + -6.8 724,777 + -2.1 724,777 + -2.3 724,777 + -4.3 724,777 + -6.8 724,777 + -3.8 724,777 + -3.4 724,778 - -2.7 724,778 - -2.7 724,778 - -4.9 724,778 - -4.8 724,778 - -5.9 724,778 - -4.4 724,778 - -2.1 724,778 - -3.5 724,778 - -1.9 724,778 - -3.7 724,778 - -3.0 724,778 - -3.9 724,907 - GFF1861 0.17 -4.9 724,975 + GFF1861 0.24 -4.0 724,975 + GFF1861 0.24 -0.3 724,975 + GFF1861 0.24 -3.7 724,975 + GFF1861 0.24 -1.3 724,976 - GFF1861 0.24 -2.9 725,008 + GFF1861 0.28 -4.7 725,008 + GFF1861 0.28 -4.0 725,008 + GFF1861 0.28 -4.8 725,008 + GFF1861 0.28 -3.1 725,008 + GFF1861 0.28 -1.3 725,008 + GFF1861 0.28 -1.6 725,008 + GFF1861 0.28 -2.7 725,008 + GFF1861 0.28 -2.1 725,008 + GFF1861 0.28 -5.1 725,008 + GFF1861 0.28 -2.4 725,008 + GFF1861 0.28 -4.0 725,008 + GFF1861 0.28 -5.9 725,008 + GFF1861 0.28 -5.1 725,008 + GFF1861 0.28 -5.2 725,009 - GFF1861 0.28 -1.3 725,009 - GFF1861 0.28 -2.3 725,009 - GFF1861 0.28 -3.3 725,009 - GFF1861 0.28 -3.7 725,009 - GFF1861 0.28 -2.4 725,009 - GFF1861 0.28 -3.1 725,009 - GFF1861 0.28 -6.9 725,009 - GFF1861 0.28 -5.3 725,009 - GFF1861 0.28 -3.9 725,009 - GFF1861 0.28 -2.4 725,009 - GFF1861 0.28 -6.6 725,047 + GFF1861 0.32 -4.4 725,047 + GFF1861 0.32 -3.1 725,047 + GFF1861 0.32 -1.9 725,047 + GFF1861 0.32 -2.3 725,047 + GFF1861 0.32 -2.9 725,047 + GFF1861 0.32 -4.2 725,047 + GFF1861 0.32 -1.9 725,048 - GFF1861 0.32 -5.7 725,048 - GFF1861 0.32 -4.2 725,048 - GFF1861 0.32 -4.7 725,048 - GFF1861 0.32 -0.3 725,048 - GFF1861 0.32 -2.6 725,071 + GFF1861 0.34 -6.2 725,071 + GFF1861 0.34 -3.4 725,071 + GFF1861 0.34 -2.7 725,071 + GFF1861 0.34 -4.6 725,072 - GFF1861 0.34 -4.3 725,072 - GFF1861 0.34 -5.1 725,072 - GFF1861 0.34 -4.7 725,072 - GFF1861 0.34 -1.9 725,072 - GFF1861 0.34 -3.2 725,072 - GFF1861 0.34 -3.0 725,263 + GFF1861 0.54 -0.9 725,263 + GFF1861 0.54 -2.7 725,263 + GFF1861 0.54 -5.2 725,263 + GFF1861 0.54 -1.6 725,263 + GFF1861 0.54 -2.7 725,263 + GFF1861 0.54 -5.1 725,263 + GFF1861 0.54 -3.9 725,263 + GFF1861 0.54 -5.7 725,263 + GFF1861 0.54 -6.1 725,263 + GFF1861 0.54 -2.3 725,263 + GFF1861 0.54 -1.3 725,263 + GFF1861 0.54 -5.0 725,264 - GFF1861 0.54 -3.1 725,264 - GFF1861 0.54 -6.1 725,264 - GFF1861 0.54 -3.2 725,264 - GFF1861 0.54 -7.7 725,264 - GFF1861 0.54 -5.3 725,264 - GFF1861 0.54 -3.7 725,264 - GFF1861 0.54 -3.3 725,264 - GFF1861 0.54 -7.2 725,264 - GFF1861 0.54 -4.1 725,264 - GFF1861 0.54 -6.5 725,302 + GFF1861 0.58 -5.0 725,302 + GFF1861 0.58 -3.7 725,303 - GFF1861 0.58 -6.9 725,303 - GFF1861 0.58 -3.4 725,303 - GFF1861 0.58 -5.9 725,303 - GFF1861 0.58 -4.2 725,303 - GFF1861 0.58 -4.9 725,380 + GFF1861 0.66 -3.9 725,380 + GFF1861 0.66 -1.9 725,380 + GFF1861 0.66 -5.3 725,380 + GFF1861 0.66 -4.9 725,380 + GFF1861 0.66 -3.0 725,381 - GFF1861 0.66 +0.3 725,389 + GFF1861 0.67 -3.4 725,389 + GFF1861 0.67 -2.3 725,389 + GFF1861 0.67 -5.1 725,389 + GFF1861 0.67 -4.1 725,389 + GFF1861 0.67 -6.0 725,390 - GFF1861 0.67 -3.2 725,390 - GFF1861 0.67 -5.0 725,390 - GFF1861 0.67 -2.1 725,390 - GFF1861 0.67 -4.1 725,390 - GFF1861 0.67 -3.2 725,390 - GFF1861 0.67 +0.7 725,449 + GFF1861 0.73 -2.4 725,449 + GFF1861 0.73 -3.2 725,449 + GFF1861 0.73 -1.3 725,449 + GFF1861 0.73 -6.5 725,449 + GFF1861 0.73 -4.1 725,449 + GFF1861 0.73 -5.7 725,450 - GFF1861 0.73 -5.3 725,450 - GFF1861 0.73 -1.6 725,450 - GFF1861 0.73 -5.0 725,450 - GFF1861 0.73 -7.0 725,509 + GFF1861 0.79 -7.1 725,509 + GFF1861 0.79 -3.7 725,509 + GFF1861 0.79 -7.8 725,509 + GFF1861 0.79 -3.3 725,509 + GFF1861 0.79 -5.4 725,509 + GFF1861 0.79 -3.5 725,509 + GFF1861 0.79 -2.9 725,509 + GFF1861 0.79 -2.1 725,509 + GFF1861 0.79 -3.0 725,509 + GFF1861 0.79 -3.7 725,510 - GFF1861 0.79 -2.6 725,510 - GFF1861 0.79 -6.7 725,510 - GFF1861 0.79 -3.0 725,510 - GFF1861 0.79 -3.8 725,510 - GFF1861 0.79 -3.8 725,510 - GFF1861 0.79 -4.0 725,510 - GFF1861 0.79 -3.6 725,510 - GFF1861 0.79 -3.1 725,510 - GFF1861 0.79 -3.1 725,542 + GFF1861 0.82 -1.9 725,543 - GFF1861 0.83 -3.1 725,551 + GFF1861 0.83 -2.4 725,551 + GFF1861 0.83 -6.3 725,552 - GFF1861 0.83 -0.3 725,552 - GFF1861 0.83 -4.7 725,552 - GFF1861 0.83 -4.5 725,552 - GFF1861 0.83 -2.7 725,552 - GFF1861 0.83 -5.6 725,552 - GFF1861 0.83 -1.6 725,552 - GFF1861 0.83 -0.9 725,707 + -0.4 725,708 - -0.1 725,943 + GFF1862 0.28 -5.8 725,943 + GFF1862 0.28 -5.1 725,943 + GFF1862 0.28 -3.1 725,943 + GFF1862 0.28 -3.8 725,943 + GFF1862 0.28 -4.0 725,943 + GFF1862 0.28 -3.8 725,943 - GFF1862 0.28 -3.7 725,944 - GFF1862 0.28 -5.2 725,944 - GFF1862 0.28 -3.1 725,944 - GFF1862 0.28 -7.5 725,944 - GFF1862 0.28 +0.7 725,944 - GFF1862 0.28 -4.4 725,944 - GFF1862 0.28 -4.2 725,944 - GFF1862 0.28 -2.3 726,015 + GFF1862 0.38 -5.3 726,016 - GFF1862 0.38 -2.3 726,016 - GFF1862 0.38 -6.1 726,016 - GFF1862 0.38 -2.9 726,016 - GFF1862 0.38 -3.6 726,171 + GFF1862 0.58 -2.9 726,171 + GFF1862 0.58 -3.4 726,171 + GFF1862 0.58 -5.1 726,171 + GFF1862 0.58 -2.4 726,172 - GFF1862 0.58 -4.0 726,172 - GFF1862 0.58 -1.9 726,249 + GFF1862 0.68 -6.6 726,250 - GFF1862 0.68 -4.0 726,250 - GFF1862 0.68 -1.9 726,459 + -1.3 726,740 + GFF1863 0.26 -2.5 726,740 + GFF1863 0.26 -1.0 726,740 + GFF1863 0.26 -1.3 726,741 - GFF1863 0.26 -0.1 726,741 - GFF1863 0.26 -1.1 726,995 + GFF1863 0.53 -1.0 726,995 + GFF1863 0.53 +0.1 726,995 + GFF1863 0.53 -2.3 726,995 + GFF1863 0.53 -0.5 726,995 + GFF1863 0.53 -0.3 726,995 + GFF1863 0.53 +0.7 726,995 + GFF1863 0.53 -1.1 726,996 - GFF1863 0.53 -0.4 726,996 - GFF1863 0.53 -1.3 726,996 - GFF1863 0.53 -0.4 726,996 - GFF1863 0.53 -1.0 726,996 - GFF1863 0.53 -0.2 726,997 - GFF1863 0.54 -0.9
Or see this region's nucleotide sequence