Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF178 and GFF179 are separated by 7 nucleotides GFF179 and GFF180 are separated by 85 nucleotides GFF180 and GFF181 overlap by 27 nucleotides GFF181 and GFF182 are separated by 32 nucleotides
GFF178 - 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45), at 191,778 to 192,737
GFF178
GFF179 - Small-conductance mechanosensitive channel, at 192,745 to 193,320
GFF179
GFF180 - hypothetical protein, at 193,406 to 193,702
GFF180
GFF181 - Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation), at 193,676 to 195,007
GFF181
GFF182 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 195,040 to 196,035
GFF182
Position (kb) 193
194
195
196 Strain fitness (log2 ratio) -2
-1
0
1 at 192.876 kb on - strand, within GFF179 at 193.502 kb on + strand, within GFF180 at 193.503 kb on - strand, within GFF180 at 193.503 kb on - strand, within GFF180 at 193.757 kb on + strand at 194.021 kb on + strand, within GFF181 at 194.022 kb on - strand, within GFF181 at 194.156 kb on + strand, within GFF181 at 194.156 kb on + strand, within GFF181 at 194.156 kb on + strand, within GFF181 at 194.436 kb on - strand, within GFF181 at 194.436 kb on - strand, within GFF181 at 194.525 kb on + strand, within GFF181 at 194.525 kb on + strand, within GFF181 at 194.525 kb on + strand, within GFF181 at 194.526 kb on - strand, within GFF181 at 194.526 kb on - strand, within GFF181 at 195.521 kb on - strand, within GFF182 at 195.754 kb on + strand, within GFF182 at 195.755 kb on - strand, within GFF182 at 195.817 kb on + strand, within GFF182
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 192,876 - GFF179 0.23 -2.1 193,502 + GFF180 0.32 +0.1 193,503 - GFF180 0.33 -0.4 193,503 - GFF180 0.33 +0.3 193,757 + -0.0 194,021 + GFF181 0.26 +0.5 194,022 - GFF181 0.26 +0.3 194,156 + GFF181 0.36 -1.3 194,156 + GFF181 0.36 +0.3 194,156 + GFF181 0.36 -0.3 194,436 - GFF181 0.57 -0.3 194,436 - GFF181 0.57 -2.5 194,525 + GFF181 0.64 +0.9 194,525 + GFF181 0.64 -0.1 194,525 + GFF181 0.64 -0.3 194,526 - GFF181 0.64 +0.3 194,526 - GFF181 0.64 +0.7 195,521 - GFF182 0.48 +0.2 195,754 + GFF182 0.72 +0.6 195,755 - GFF182 0.72 +0.1 195,817 + GFF182 0.78 +0.8
Or see this region's nucleotide sequence