Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1784

Experiment: Ying_sugar7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1783 and GFF1784 are separated by 104 nucleotidesGFF1784 and GFF1785 are separated by 105 nucleotidesGFF1785 and GFF2354 are separated by 112 nucleotidesGFF2354 and GFF1786 are separated by 59 nucleotides GFF1783 - TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein, at 647,324 to 648,310 GFF1783 GFF1784 - Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family), at 648,415 to 649,443 GFF1784 GFF1785 - hypothetical protein, at 649,549 to 649,917 GFF1785 GFF2354 - tRNA-Phe-GAA, at 650,030 to 650,102 GFF2354 GFF1786 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 650,162 to 650,860 GFF1786 Position (kb) 648 649 650Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 647.604 kb on + strand, within GFF1783at 647.604 kb on + strand, within GFF1783at 647.604 kb on + strand, within GFF1783at 647.604 kb on + strand, within GFF1783at 647.605 kb on - strand, within GFF1783at 647.605 kb on - strand, within GFF1783at 647.605 kb on - strand, within GFF1783at 647.605 kb on - strand, within GFF1783at 647.605 kb on - strand, within GFF1783at 648.008 kb on + strand, within GFF1783at 648.183 kb on + strand, within GFF1783at 648.183 kb on + strand, within GFF1783at 648.183 kb on + strand, within GFF1783at 648.183 kb on + strand, within GFF1783at 648.183 kb on + strand, within GFF1783at 648.184 kb on - strand, within GFF1783at 648.184 kb on - strand, within GFF1783at 648.184 kb on - strand, within GFF1783at 648.184 kb on - strand, within GFF1783at 648.184 kb on - strand, within GFF1783at 648.207 kb on + strand, within GFF1783at 648.329 kb on + strandat 648.329 kb on + strandat 648.329 kb on + strandat 648.329 kb on + strandat 648.329 kb on + strandat 648.329 kb on + strandat 648.329 kb on + strandat 648.330 kb on - strandat 648.330 kb on - strandat 648.330 kb on - strandat 648.330 kb on - strandat 648.330 kb on - strandat 648.330 kb on - strandat 648.330 kb on - strandat 648.330 kb on - strandat 648.330 kb on - strandat 648.330 kb on - strandat 648.330 kb on - strandat 648.330 kb on - strandat 648.330 kb on - strandat 648.355 kb on + strandat 648.355 kb on + strandat 648.355 kb on + strandat 648.355 kb on + strandat 648.355 kb on + strandat 648.355 kb on + strandat 648.355 kb on + strandat 648.356 kb on - strandat 648.356 kb on - strandat 648.356 kb on - strandat 648.356 kb on - strandat 648.356 kb on - strandat 648.356 kb on - strandat 648.356 kb on - strandat 648.356 kb on - strandat 648.356 kb on - strandat 648.401 kb on + strandat 648.401 kb on + strandat 648.401 kb on + strandat 648.439 kb on + strandat 648.439 kb on + strandat 648.439 kb on + strandat 648.439 kb on + strandat 648.607 kb on + strand, within GFF1784at 648.607 kb on + strand, within GFF1784at 648.607 kb on + strand, within GFF1784at 648.607 kb on + strand, within GFF1784at 648.607 kb on + strand, within GFF1784at 648.607 kb on + strand, within GFF1784at 648.607 kb on + strand, within GFF1784at 648.608 kb on - strand, within GFF1784at 648.608 kb on - strand, within GFF1784at 648.608 kb on - strand, within GFF1784at 648.608 kb on - strand, within GFF1784at 648.608 kb on - strand, within GFF1784at 648.610 kb on + strand, within GFF1784at 648.610 kb on + strand, within GFF1784at 648.610 kb on + strand, within GFF1784at 648.610 kb on + strand, within GFF1784at 648.610 kb on + strand, within GFF1784at 648.610 kb on + strand, within GFF1784at 648.610 kb on + strand, within GFF1784at 648.610 kb on + strand, within GFF1784at 648.611 kb on - strand, within GFF1784at 648.611 kb on - strand, within GFF1784at 648.611 kb on - strand, within GFF1784at 648.611 kb on - strand, within GFF1784at 648.611 kb on - strand, within GFF1784at 648.611 kb on - strand, within GFF1784at 648.611 kb on - strand, within GFF1784at 648.611 kb on - strand, within GFF1784at 648.611 kb on - strand, within GFF1784at 648.611 kb on - strand, within GFF1784at 648.611 kb on - strand, within GFF1784at 648.611 kb on - strand, within GFF1784at 648.948 kb on + strand, within GFF1784at 649.024 kb on + strand, within GFF1784at 649.025 kb on - strand, within GFF1784at 649.025 kb on - strand, within GFF1784at 649.025 kb on - strand, within GFF1784at 649.042 kb on + strand, within GFF1784at 649.042 kb on + strand, within GFF1784at 649.042 kb on + strand, within GFF1784at 649.043 kb on - strand, within GFF1784at 649.043 kb on - strand, within GFF1784at 649.043 kb on - strand, within GFF1784at 649.081 kb on + strand, within GFF1784at 649.081 kb on + strand, within GFF1784at 649.082 kb on - strand, within GFF1784at 649.183 kb on + strand, within GFF1784at 649.183 kb on + strand, within GFF1784at 649.183 kb on + strand, within GFF1784at 649.184 kb on - strand, within GFF1784at 649.184 kb on - strand, within GFF1784at 649.184 kb on - strand, within GFF1784at 649.184 kb on - strand, within GFF1784at 649.184 kb on - strand, within GFF1784at 649.231 kb on + strand, within GFF1784at 649.232 kb on - strand, within GFF1784at 649.232 kb on - strand, within GFF1784at 649.232 kb on - strand, within GFF1784at 649.232 kb on - strand, within GFF1784at 649.232 kb on - strand, within GFF1784at 649.763 kb on + strand, within GFF1785at 649.764 kb on - strand, within GFF1785at 649.764 kb on - strand, within GFF1785at 649.764 kb on - strand, within GFF1785at 649.764 kb on - strand, within GFF1785at 649.764 kb on - strand, within GFF1785at 649.764 kb on - strand, within GFF1785at 649.764 kb on - strand, within GFF1785at 649.879 kb on + strand, within GFF1785at 650.123 kb on - strandat 650.123 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
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647,604 + GFF1783 0.28 +1.7
647,604 + GFF1783 0.28 +0.1
647,604 + GFF1783 0.28 -0.4
647,604 + GFF1783 0.28 -0.1
647,605 - GFF1783 0.28 -1.1
647,605 - GFF1783 0.28 +0.7
647,605 - GFF1783 0.28 +0.2
647,605 - GFF1783 0.28 +0.7
647,605 - GFF1783 0.28 +0.7
648,008 + GFF1783 0.69 -0.1
648,183 + GFF1783 0.87 -1.3
648,183 + GFF1783 0.87 -0.7
648,183 + GFF1783 0.87 +0.2
648,183 + GFF1783 0.87 -0.3
648,183 + GFF1783 0.87 -0.3
648,184 - GFF1783 0.87 -0.0
648,184 - GFF1783 0.87 -0.3
648,184 - GFF1783 0.87 +0.4
648,184 - GFF1783 0.87 +0.3
648,184 - GFF1783 0.87 -0.2
648,207 + GFF1783 0.89 -0.8
648,329 + +0.1
648,329 + +0.1
648,329 + -0.4
648,329 + +0.7
648,329 + +2.5
648,329 + +0.2
648,329 + -0.3
648,330 - -0.3
648,330 - +0.2
648,330 - +0.0
648,330 - -0.3
648,330 - +0.1
648,330 - -0.5
648,330 - -0.3
648,330 - +0.3
648,330 - -0.0
648,330 - +0.4
648,330 - +1.5
648,330 - +0.7
648,330 - -0.5
648,355 + -0.0
648,355 + -1.2
648,355 + +0.1
648,355 + +0.3
648,355 + +0.1
648,355 + -0.1
648,355 + -0.1
648,356 - -0.4
648,356 - +0.1
648,356 - -0.9
648,356 - +1.1
648,356 - -0.7
648,356 - +0.2
648,356 - -0.6
648,356 - -1.0
648,356 - +0.1
648,401 + +2.2
648,401 + +0.7
648,401 + +0.2
648,439 + -0.2
648,439 + -0.6
648,439 + -0.8
648,439 + +0.3
648,607 + GFF1784 0.19 -0.8
648,607 + GFF1784 0.19 +0.0
648,607 + GFF1784 0.19 -0.8
648,607 + GFF1784 0.19 +0.0
648,607 + GFF1784 0.19 +0.4
648,607 + GFF1784 0.19 -0.7
648,607 + GFF1784 0.19 +0.6
648,608 - GFF1784 0.19 +0.3
648,608 - GFF1784 0.19 +0.7
648,608 - GFF1784 0.19 +0.6
648,608 - GFF1784 0.19 -0.7
648,608 - GFF1784 0.19 -0.1
648,610 + GFF1784 0.19 +0.7
648,610 + GFF1784 0.19 +0.8
648,610 + GFF1784 0.19 +0.7
648,610 + GFF1784 0.19 +0.7
648,610 + GFF1784 0.19 -1.5
648,610 + GFF1784 0.19 -0.6
648,610 + GFF1784 0.19 -0.1
648,610 + GFF1784 0.19 -0.5
648,611 - GFF1784 0.19 -0.9
648,611 - GFF1784 0.19 +0.5
648,611 - GFF1784 0.19 +2.3
648,611 - GFF1784 0.19 +0.6
648,611 - GFF1784 0.19 +0.4
648,611 - GFF1784 0.19 -0.0
648,611 - GFF1784 0.19 +0.2
648,611 - GFF1784 0.19 +0.1
648,611 - GFF1784 0.19 +0.0
648,611 - GFF1784 0.19 +0.4
648,611 - GFF1784 0.19 +1.7
648,611 - GFF1784 0.19 +0.0
648,948 + GFF1784 0.52 -0.6
649,024 + GFF1784 0.59 -0.1
649,025 - GFF1784 0.59 +0.3
649,025 - GFF1784 0.59 +0.7
649,025 - GFF1784 0.59 -0.2
649,042 + GFF1784 0.61 -1.0
649,042 + GFF1784 0.61 +1.6
649,042 + GFF1784 0.61 -0.2
649,043 - GFF1784 0.61 +0.8
649,043 - GFF1784 0.61 -1.4
649,043 - GFF1784 0.61 +0.2
649,081 + GFF1784 0.65 +0.7
649,081 + GFF1784 0.65 -0.7
649,082 - GFF1784 0.65 -0.3
649,183 + GFF1784 0.75 -0.2
649,183 + GFF1784 0.75 -0.4
649,183 + GFF1784 0.75 +0.3
649,184 - GFF1784 0.75 -0.4
649,184 - GFF1784 0.75 -0.6
649,184 - GFF1784 0.75 -0.2
649,184 - GFF1784 0.75 -1.1
649,184 - GFF1784 0.75 +0.4
649,231 + GFF1784 0.79 -0.0
649,232 - GFF1784 0.79 +1.4
649,232 - GFF1784 0.79 -0.5
649,232 - GFF1784 0.79 +0.6
649,232 - GFF1784 0.79 +0.3
649,232 - GFF1784 0.79 +1.0
649,763 + GFF1785 0.58 +0.4
649,764 - GFF1785 0.58 +0.4
649,764 - GFF1785 0.58 +1.1
649,764 - GFF1785 0.58 -0.4
649,764 - GFF1785 0.58 +1.3
649,764 - GFF1785 0.58 +0.3
649,764 - GFF1785 0.58 -0.2
649,764 - GFF1785 0.58 -0.6
649,879 + GFF1785 0.89 -2.8
650,123 - +0.5
650,123 - +0.7

Or see this region's nucleotide sequence