Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1756 and GFF1757 are separated by 86 nucleotides GFF1757 and GFF1758 overlap by 4 nucleotides GFF1758 and GFF1759 are separated by 149 nucleotides GFF1759 and GFF1760 are separated by 34 nucleotides
GFF1756 - Threonine dehydratase (EC 4.3.1.19), at 619,214 to 620,182
GFF1756
GFF1757 - response regulator in two-component regulatory system with PhoQ, at 620,269 to 620,976
GFF1757
GFF1758 - periplasmic sensor signal transduction histidine kinase, at 620,973 to 622,346
GFF1758
GFF1759 - Tricarboxylate transport protein TctB, at 622,496 to 622,981
GFF1759
GFF1760 - Tricarboxylate transport membrane protein TctA, at 623,016 to 624,527
GFF1760
Position (kb)
620
621
622
623 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 620.329 kb on + strand at 620.329 kb on + strand at 620.329 kb on + strand at 620.329 kb on + strand at 620.330 kb on - strand at 620.331 kb on + strand at 620.331 kb on + strand at 620.332 kb on - strand at 620.332 kb on - strand at 620.581 kb on + strand, within GFF1757 at 620.581 kb on + strand, within GFF1757 at 620.581 kb on + strand, within GFF1757 at 620.582 kb on - strand, within GFF1757 at 620.582 kb on - strand, within GFF1757 at 620.770 kb on + strand, within GFF1757 at 620.770 kb on + strand, within GFF1757 at 620.771 kb on - strand, within GFF1757 at 620.771 kb on - strand, within GFF1757 at 620.833 kb on + strand, within GFF1757 at 620.834 kb on - strand, within GFF1757 at 620.834 kb on - strand, within GFF1757 at 620.834 kb on - strand, within GFF1757 at 621.027 kb on + strand at 621.028 kb on - strand at 621.028 kb on - strand at 621.028 kb on - strand at 621.028 kb on - strand at 621.030 kb on + strand at 621.031 kb on - strand at 621.078 kb on + strand at 621.078 kb on + strand at 621.079 kb on - strand at 621.079 kb on - strand at 621.079 kb on - strand at 621.237 kb on + strand, within GFF1758 at 621.237 kb on + strand, within GFF1758 at 621.238 kb on - strand, within GFF1758 at 621.360 kb on + strand, within GFF1758 at 621.360 kb on + strand, within GFF1758 at 621.360 kb on + strand, within GFF1758 at 621.360 kb on + strand, within GFF1758 at 621.361 kb on - strand, within GFF1758 at 621.361 kb on - strand, within GFF1758 at 621.361 kb on - strand, within GFF1758 at 621.361 kb on - strand, within GFF1758 at 621.361 kb on - strand, within GFF1758 at 621.361 kb on - strand, within GFF1758 at 621.824 kb on - strand, within GFF1758 at 622.071 kb on + strand, within GFF1758 at 622.071 kb on + strand, within GFF1758 at 622.071 kb on + strand, within GFF1758 at 622.071 kb on + strand, within GFF1758 at 622.072 kb on - strand, within GFF1758 at 622.416 kb on + strand at 622.417 kb on - strand at 622.580 kb on + strand, within GFF1759 at 622.580 kb on + strand, within GFF1759 at 622.580 kb on + strand, within GFF1759 at 622.580 kb on + strand, within GFF1759 at 622.580 kb on + strand, within GFF1759 at 622.580 kb on + strand, within GFF1759 at 622.581 kb on - strand, within GFF1759 at 622.581 kb on - strand, within GFF1759 at 622.581 kb on - strand, within GFF1759 at 622.581 kb on - strand, within GFF1759 at 622.581 kb on - strand, within GFF1759 at 622.581 kb on - strand, within GFF1759 at 622.581 kb on - strand, within GFF1759 at 622.616 kb on + strand, within GFF1759 at 622.617 kb on - strand, within GFF1759 at 622.617 kb on - strand, within GFF1759 at 622.760 kb on - strand, within GFF1759 at 622.829 kb on + strand, within GFF1759 at 622.829 kb on + strand, within GFF1759 at 622.829 kb on + strand, within GFF1759 at 622.829 kb on + strand, within GFF1759 at 622.829 kb on + strand, within GFF1759 at 622.829 kb on + strand, within GFF1759 at 622.829 kb on + strand, within GFF1759 at 622.829 kb on + strand, within GFF1759 at 622.829 kb on + strand, within GFF1759 at 622.829 kb on + strand, within GFF1759 at 622.830 kb on - strand, within GFF1759 at 622.830 kb on - strand, within GFF1759 at 622.919 kb on + strand, within GFF1759 at 622.919 kb on + strand, within GFF1759 at 622.919 kb on + strand, within GFF1759 at 622.919 kb on + strand, within GFF1759 at 622.919 kb on + strand, within GFF1759 at 622.919 kb on + strand, within GFF1759 at 622.919 kb on + strand, within GFF1759 at 622.919 kb on + strand, within GFF1759 at 622.919 kb on + strand, within GFF1759 at 622.920 kb on - strand, within GFF1759 at 622.920 kb on - strand, within GFF1759 at 622.920 kb on - strand, within GFF1759 at 622.920 kb on - strand, within GFF1759 at 622.920 kb on - strand, within GFF1759 at 622.920 kb on - strand, within GFF1759 at 622.920 kb on - strand, within GFF1759 at 622.920 kb on - strand, within GFF1759 at 623.079 kb on + strand at 623.079 kb on + strand at 623.079 kb on + strand at 623.079 kb on + strand at 623.079 kb on + strand at 623.079 kb on + strand at 623.079 kb on + strand at 623.080 kb on - strand at 623.080 kb on - strand at 623.080 kb on - strand at 623.080 kb on - strand at 623.080 kb on - strand at 623.080 kb on - strand at 623.172 kb on + strand, within GFF1760 at 623.172 kb on + strand, within GFF1760 at 623.172 kb on + strand, within GFF1760 at 623.173 kb on - strand, within GFF1760 at 623.173 kb on - strand, within GFF1760 at 623.173 kb on - strand, within GFF1760 at 623.217 kb on + strand, within GFF1760 at 623.217 kb on + strand, within GFF1760 at 623.217 kb on + strand, within GFF1760 at 623.217 kb on + strand, within GFF1760 at 623.217 kb on + strand, within GFF1760 at 623.217 kb on + strand, within GFF1760 at 623.217 kb on + strand, within GFF1760 at 623.218 kb on - strand, within GFF1760 at 623.218 kb on - strand, within GFF1760 at 623.218 kb on - strand, within GFF1760 at 623.218 kb on - strand, within GFF1760 at 623.218 kb on - strand, within GFF1760 at 623.220 kb on + strand, within GFF1760 at 623.220 kb on + strand, within GFF1760 at 623.220 kb on + strand, within GFF1760 at 623.221 kb on - strand, within GFF1760 at 623.221 kb on - strand, within GFF1760 at 623.221 kb on - strand, within GFF1760 at 623.232 kb on + strand, within GFF1760 at 623.232 kb on + strand, within GFF1760 at 623.232 kb on + strand, within GFF1760 at 623.233 kb on - strand, within GFF1760 at 623.307 kb on + strand, within GFF1760
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 620,329 + -1.6 620,329 + -1.1 620,329 + -1.0 620,329 + -2.1 620,330 - -0.6 620,331 + -3.2 620,331 + -1.7 620,332 - +0.2 620,332 - -1.3 620,581 + GFF1757 0.44 -1.1 620,581 + GFF1757 0.44 -1.2 620,581 + GFF1757 0.44 -1.0 620,582 - GFF1757 0.44 -1.1 620,582 - GFF1757 0.44 -0.8 620,770 + GFF1757 0.71 -1.7 620,770 + GFF1757 0.71 -1.1 620,771 - GFF1757 0.71 -1.6 620,771 - GFF1757 0.71 -1.0 620,833 + GFF1757 0.80 -1.1 620,834 - GFF1757 0.80 -1.3 620,834 - GFF1757 0.80 -1.5 620,834 - GFF1757 0.80 -1.4 621,027 + -1.5 621,028 - -1.7 621,028 - -1.1 621,028 - -1.8 621,028 - +0.3 621,030 + +0.1 621,031 - -0.9 621,078 + -0.7 621,078 + -1.7 621,079 - -1.3 621,079 - -1.2 621,079 - -2.0 621,237 + GFF1758 0.19 -0.8 621,237 + GFF1758 0.19 -1.8 621,238 - GFF1758 0.19 -2.9 621,360 + GFF1758 0.28 -1.6 621,360 + GFF1758 0.28 -1.1 621,360 + GFF1758 0.28 -1.1 621,360 + GFF1758 0.28 -0.9 621,361 - GFF1758 0.28 -1.4 621,361 - GFF1758 0.28 -1.4 621,361 - GFF1758 0.28 -1.4 621,361 - GFF1758 0.28 -1.1 621,361 - GFF1758 0.28 -0.3 621,361 - GFF1758 0.28 -0.8 621,824 - GFF1758 0.62 -1.9 622,071 + GFF1758 0.80 -1.4 622,071 + GFF1758 0.80 -1.3 622,071 + GFF1758 0.80 -1.4 622,071 + GFF1758 0.80 -1.3 622,072 - GFF1758 0.80 -1.4 622,416 + +0.7 622,417 - +0.2 622,580 + GFF1759 0.17 -1.6 622,580 + GFF1759 0.17 -1.8 622,580 + GFF1759 0.17 -1.0 622,580 + GFF1759 0.17 -1.5 622,580 + GFF1759 0.17 -1.1 622,580 + GFF1759 0.17 -1.4 622,581 - GFF1759 0.17 -2.5 622,581 - GFF1759 0.17 -1.1 622,581 - GFF1759 0.17 -1.9 622,581 - GFF1759 0.17 -1.6 622,581 - GFF1759 0.17 -1.6 622,581 - GFF1759 0.17 -1.5 622,581 - GFF1759 0.17 -1.7 622,616 + GFF1759 0.25 -1.6 622,617 - GFF1759 0.25 -1.3 622,617 - GFF1759 0.25 -1.5 622,760 - GFF1759 0.54 -1.4 622,829 + GFF1759 0.69 +0.5 622,829 + GFF1759 0.69 -1.4 622,829 + GFF1759 0.69 -1.2 622,829 + GFF1759 0.69 -1.0 622,829 + GFF1759 0.69 -0.8 622,829 + GFF1759 0.69 -0.7 622,829 + GFF1759 0.69 -1.0 622,829 + GFF1759 0.69 -1.1 622,829 + GFF1759 0.69 -1.4 622,829 + GFF1759 0.69 -1.6 622,830 - GFF1759 0.69 -1.5 622,830 - GFF1759 0.69 -2.4 622,919 + GFF1759 0.87 +0.1 622,919 + GFF1759 0.87 -1.4 622,919 + GFF1759 0.87 -1.2 622,919 + GFF1759 0.87 -1.2 622,919 + GFF1759 0.87 -0.8 622,919 + GFF1759 0.87 -1.3 622,919 + GFF1759 0.87 +0.3 622,919 + GFF1759 0.87 -1.2 622,919 + GFF1759 0.87 -1.1 622,920 - GFF1759 0.87 -0.9 622,920 - GFF1759 0.87 -2.3 622,920 - GFF1759 0.87 -1.0 622,920 - GFF1759 0.87 -1.3 622,920 - GFF1759 0.87 -2.1 622,920 - GFF1759 0.87 -1.9 622,920 - GFF1759 0.87 -0.7 622,920 - GFF1759 0.87 -1.2 623,079 + -1.3 623,079 + -0.7 623,079 + -1.8 623,079 + -0.8 623,079 + -0.4 623,079 + -1.1 623,079 + -1.4 623,080 - -0.9 623,080 - -1.1 623,080 - -1.7 623,080 - -1.7 623,080 - -1.3 623,080 - +1.7 623,172 + GFF1760 0.10 -0.7 623,172 + GFF1760 0.10 -1.0 623,172 + GFF1760 0.10 -0.1 623,173 - GFF1760 0.10 -1.3 623,173 - GFF1760 0.10 +0.2 623,173 - GFF1760 0.10 -1.4 623,217 + GFF1760 0.13 -0.9 623,217 + GFF1760 0.13 -0.8 623,217 + GFF1760 0.13 -1.4 623,217 + GFF1760 0.13 +0.1 623,217 + GFF1760 0.13 -1.2 623,217 + GFF1760 0.13 -0.8 623,217 + GFF1760 0.13 -0.9 623,218 - GFF1760 0.13 -1.4 623,218 - GFF1760 0.13 -0.3 623,218 - GFF1760 0.13 -1.5 623,218 - GFF1760 0.13 -1.3 623,218 - GFF1760 0.13 -1.5 623,220 + GFF1760 0.13 -1.2 623,220 + GFF1760 0.13 -1.2 623,220 + GFF1760 0.13 -1.7 623,221 - GFF1760 0.14 -0.9 623,221 - GFF1760 0.14 -1.8 623,221 - GFF1760 0.14 -1.5 623,232 + GFF1760 0.14 -1.8 623,232 + GFF1760 0.14 -1.1 623,232 + GFF1760 0.14 -1.8 623,233 - GFF1760 0.14 -1.8 623,307 + GFF1760 0.19 -1.0
Or see this region's nucleotide sequence