Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1752

Experiment: Ying_sugar7 rep A; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1750 and GFF1751 overlap by 4 nucleotidesGFF1751 and GFF1752 are separated by 12 nucleotidesGFF1752 and GFF1753 are separated by 4 nucleotidesGFF1753 and GFF1754 are separated by 20 nucleotides GFF1750 - Transporter, LysE family, at 614,224 to 614,838 GFF1750 GFF1751 - Permease of the drug/metabolite transporter (DMT) superfamily, at 614,835 to 615,779 GFF1751 GFF1752 - Valine--pyruvate aminotransferase (EC 2.6.1.66), at 615,792 to 617,012 GFF1752 GFF1753 - Uncharacterized glutathione S-transferase-like protein, at 617,017 to 617,631 GFF1753 GFF1754 - Phenazine biosynthesis protein PhzF like, at 617,652 to 618,506 GFF1754 Position (kb) 615 616 617 618Strain fitness (log2 ratio) -2 -1 0 1 2 3at 614.834 kb on + strandat 614.834 kb on + strandat 614.835 kb on - strandat 614.835 kb on - strandat 614.835 kb on - strandat 614.835 kb on - strandat 614.835 kb on - strandat 615.153 kb on + strand, within GFF1751at 615.154 kb on - strand, within GFF1751at 615.154 kb on - strand, within GFF1751at 615.384 kb on + strand, within GFF1751at 615.384 kb on + strand, within GFF1751at 615.385 kb on - strand, within GFF1751at 615.385 kb on - strand, within GFF1751at 615.385 kb on - strand, within GFF1751at 615.390 kb on + strand, within GFF1751at 615.390 kb on + strand, within GFF1751at 615.390 kb on + strand, within GFF1751at 615.390 kb on + strand, within GFF1751at 615.534 kb on + strand, within GFF1751at 615.534 kb on + strand, within GFF1751at 615.535 kb on - strand, within GFF1751at 615.748 kb on + strandat 616.023 kb on + strand, within GFF1752at 616.023 kb on + strand, within GFF1752at 616.023 kb on + strand, within GFF1752at 616.023 kb on + strand, within GFF1752at 616.023 kb on + strand, within GFF1752at 616.041 kb on + strand, within GFF1752at 616.041 kb on + strand, within GFF1752at 616.042 kb on - strand, within GFF1752at 616.042 kb on - strand, within GFF1752at 616.194 kb on + strand, within GFF1752at 616.194 kb on + strand, within GFF1752at 616.194 kb on + strand, within GFF1752at 616.194 kb on + strand, within GFF1752at 616.194 kb on + strand, within GFF1752at 616.194 kb on + strand, within GFF1752at 616.194 kb on + strand, within GFF1752at 616.194 kb on + strand, within GFF1752at 616.194 kb on + strand, within GFF1752at 616.194 kb on + strand, within GFF1752at 616.195 kb on - strand, within GFF1752at 616.195 kb on - strand, within GFF1752at 616.195 kb on - strand, within GFF1752at 616.195 kb on - strand, within GFF1752at 616.195 kb on - strand, within GFF1752at 616.326 kb on + strand, within GFF1752at 616.326 kb on + strand, within GFF1752at 616.326 kb on + strand, within GFF1752at 616.326 kb on + strand, within GFF1752at 616.326 kb on + strand, within GFF1752at 616.327 kb on - strand, within GFF1752at 616.327 kb on - strand, within GFF1752at 616.327 kb on - strand, within GFF1752at 616.327 kb on - strand, within GFF1752at 616.327 kb on - strand, within GFF1752at 616.327 kb on - strand, within GFF1752at 616.440 kb on + strand, within GFF1752at 616.445 kb on - strand, within GFF1752at 616.509 kb on + strand, within GFF1752at 616.509 kb on + strand, within GFF1752at 616.510 kb on - strand, within GFF1752at 616.707 kb on + strand, within GFF1752at 616.707 kb on + strand, within GFF1752at 616.707 kb on + strand, within GFF1752at 616.708 kb on - strand, within GFF1752at 616.708 kb on - strand, within GFF1752at 616.708 kb on - strand, within GFF1752at 616.708 kb on - strand, within GFF1752at 616.708 kb on - strand, within GFF1752at 616.708 kb on - strand, within GFF1752at 616.708 kb on - strand, within GFF1752at 616.708 kb on - strand, within GFF1752at 616.708 kb on - strand, within GFF1752at 616.893 kb on + strandat 616.893 kb on + strandat 617.147 kb on - strand, within GFF1753at 617.230 kb on + strand, within GFF1753at 617.230 kb on + strand, within GFF1753at 617.257 kb on + strand, within GFF1753at 617.257 kb on + strand, within GFF1753at 617.257 kb on + strand, within GFF1753at 617.258 kb on - strand, within GFF1753at 617.258 kb on - strand, within GFF1753at 617.258 kb on - strand, within GFF1753at 617.573 kb on - strandat 617.573 kb on - strandat 617.573 kb on - strandat 617.573 kb on - strandat 617.573 kb on - strandat 617.844 kb on + strand, within GFF1754

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
remove
614,834 + -0.3
614,834 + -0.1
614,835 - -0.3
614,835 - -0.3
614,835 - +0.1
614,835 - -0.6
614,835 - +1.5
615,153 + GFF1751 0.34 -0.4
615,154 - GFF1751 0.34 -0.4
615,154 - GFF1751 0.34 -0.1
615,384 + GFF1751 0.58 -0.4
615,384 + GFF1751 0.58 -0.2
615,385 - GFF1751 0.58 +0.1
615,385 - GFF1751 0.58 +1.1
615,385 - GFF1751 0.58 +0.1
615,390 + GFF1751 0.59 -0.0
615,390 + GFF1751 0.59 +0.1
615,390 + GFF1751 0.59 +0.6
615,390 + GFF1751 0.59 +0.2
615,534 + GFF1751 0.74 -0.0
615,534 + GFF1751 0.74 +0.1
615,535 - GFF1751 0.74 +0.9
615,748 + +0.3
616,023 + GFF1752 0.19 +0.2
616,023 + GFF1752 0.19 -0.5
616,023 + GFF1752 0.19 +0.7
616,023 + GFF1752 0.19 -0.4
616,023 + GFF1752 0.19 -0.5
616,041 + GFF1752 0.20 -0.3
616,041 + GFF1752 0.20 +0.2
616,042 - GFF1752 0.20 +1.1
616,042 - GFF1752 0.20 +3.1
616,194 + GFF1752 0.33 -0.1
616,194 + GFF1752 0.33 -0.9
616,194 + GFF1752 0.33 -0.6
616,194 + GFF1752 0.33 -1.4
616,194 + GFF1752 0.33 -0.1
616,194 + GFF1752 0.33 -0.7
616,194 + GFF1752 0.33 -2.3
616,194 + GFF1752 0.33 -0.6
616,194 + GFF1752 0.33 -1.3
616,194 + GFF1752 0.33 -0.3
616,195 - GFF1752 0.33 -0.8
616,195 - GFF1752 0.33 -0.4
616,195 - GFF1752 0.33 -0.7
616,195 - GFF1752 0.33 -0.0
616,195 - GFF1752 0.33 +0.7
616,326 + GFF1752 0.44 +0.0
616,326 + GFF1752 0.44 -0.8
616,326 + GFF1752 0.44 -0.4
616,326 + GFF1752 0.44 -1.1
616,326 + GFF1752 0.44 -0.3
616,327 - GFF1752 0.44 -0.3
616,327 - GFF1752 0.44 +0.5
616,327 - GFF1752 0.44 -0.3
616,327 - GFF1752 0.44 -0.0
616,327 - GFF1752 0.44 -0.4
616,327 - GFF1752 0.44 -0.1
616,440 + GFF1752 0.53 -0.3
616,445 - GFF1752 0.53 -0.9
616,509 + GFF1752 0.59 -0.3
616,509 + GFF1752 0.59 +0.1
616,510 - GFF1752 0.59 -0.9
616,707 + GFF1752 0.75 +0.3
616,707 + GFF1752 0.75 -0.4
616,707 + GFF1752 0.75 -1.0
616,708 - GFF1752 0.75 -0.5
616,708 - GFF1752 0.75 -0.8
616,708 - GFF1752 0.75 +0.1
616,708 - GFF1752 0.75 +0.3
616,708 - GFF1752 0.75 +0.3
616,708 - GFF1752 0.75 -1.1
616,708 - GFF1752 0.75 -1.1
616,708 - GFF1752 0.75 +0.2
616,708 - GFF1752 0.75 +1.0
616,893 + -0.4
616,893 + +0.0
617,147 - GFF1753 0.21 -0.1
617,230 + GFF1753 0.35 -0.3
617,230 + GFF1753 0.35 +0.3
617,257 + GFF1753 0.39 -0.3
617,257 + GFF1753 0.39 +0.1
617,257 + GFF1753 0.39 +2.7
617,258 - GFF1753 0.39 -0.8
617,258 - GFF1753 0.39 -0.2
617,258 - GFF1753 0.39 +0.5
617,573 - +0.0
617,573 - -0.8
617,573 - -0.3
617,573 - +0.1
617,573 - +0.1
617,844 + GFF1754 0.22 +0.1

Or see this region's nucleotide sequence