Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1731 and GFF1732 are separated by 90 nucleotides GFF1732 and GFF1733 are separated by 8 nucleotides GFF1733 and GFF1734 are separated by 14 nucleotides GFF1734 and GFF1735 are separated by 7 nucleotides
GFF1731 - Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family, at 585,897 to 586,304
GFF1731
GFF1732 - Putative predicted metal-dependent hydrolase, at 586,395 to 587,288
GFF1732
GFF1733 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 587,297 to 588,046
GFF1733
GFF1734 - Histidinol-phosphatase (EC 3.1.3.15), at 588,061 to 588,645
GFF1734
GFF1735 - Glycyl-tRNA synthetase beta chain (EC 6.1.1.14), at 588,653 to 590,767
GFF1735
Position (kb)
587
588
589 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 586.320 kb on + strand at 586.320 kb on + strand at 586.321 kb on - strand at 586.321 kb on - strand at 586.321 kb on - strand at 586.330 kb on + strand at 586.330 kb on + strand at 586.330 kb on + strand at 586.330 kb on + strand at 586.330 kb on + strand at 586.330 kb on + strand at 586.330 kb on + strand at 586.331 kb on - strand at 586.331 kb on - strand at 586.331 kb on - strand at 586.534 kb on + strand, within GFF1732 at 586.534 kb on + strand, within GFF1732 at 586.534 kb on + strand, within GFF1732 at 586.535 kb on - strand, within GFF1732 at 586.535 kb on - strand, within GFF1732 at 586.535 kb on - strand, within GFF1732 at 586.535 kb on - strand, within GFF1732 at 586.645 kb on + strand, within GFF1732 at 586.645 kb on + strand, within GFF1732 at 586.646 kb on - strand, within GFF1732 at 586.879 kb on + strand, within GFF1732 at 586.879 kb on + strand, within GFF1732 at 586.880 kb on - strand, within GFF1732 at 587.095 kb on + strand, within GFF1732 at 587.095 kb on + strand, within GFF1732 at 587.095 kb on + strand, within GFF1732 at 587.096 kb on - strand, within GFF1732 at 587.096 kb on - strand, within GFF1732 at 587.096 kb on - strand, within GFF1732 at 587.096 kb on - strand, within GFF1732 at 587.096 kb on - strand, within GFF1732 at 587.096 kb on - strand, within GFF1732 at 587.310 kb on + strand at 587.311 kb on - strand at 587.538 kb on + strand, within GFF1733 at 587.538 kb on + strand, within GFF1733 at 587.539 kb on - strand, within GFF1733 at 587.539 kb on - strand, within GFF1733 at 587.539 kb on - strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.716 kb on - strand, within GFF1733 at 587.716 kb on - strand, within GFF1733 at 587.716 kb on - strand, within GFF1733 at 587.716 kb on - strand, within GFF1733 at 587.716 kb on - strand, within GFF1733 at 587.739 kb on + strand, within GFF1733 at 587.739 kb on + strand, within GFF1733 at 587.739 kb on + strand, within GFF1733 at 587.739 kb on + strand, within GFF1733 at 587.739 kb on + strand, within GFF1733 at 587.739 kb on + strand, within GFF1733 at 587.740 kb on - strand, within GFF1733 at 587.740 kb on - strand, within GFF1733 at 587.740 kb on - strand, within GFF1733 at 587.740 kb on - strand, within GFF1733 at 587.740 kb on - strand, within GFF1733 at 587.740 kb on - strand, within GFF1733 at 587.825 kb on - strand, within GFF1733 at 587.928 kb on + strand, within GFF1733 at 587.928 kb on + strand, within GFF1733 at 587.928 kb on + strand, within GFF1733 at 587.928 kb on + strand, within GFF1733 at 587.928 kb on + strand, within GFF1733 at 587.928 kb on + strand, within GFF1733 at 587.928 kb on + strand, within GFF1733 at 587.929 kb on - strand, within GFF1733 at 587.929 kb on - strand, within GFF1733 at 587.929 kb on - strand, within GFF1733 at 587.929 kb on - strand, within GFF1733 at 587.929 kb on - strand, within GFF1733 at 587.929 kb on - strand, within GFF1733 at 587.929 kb on - strand, within GFF1733 at 587.929 kb on - strand, within GFF1733 at 588.590 kb on + strand at 588.590 kb on + strand at 588.591 kb on - strand at 588.591 kb on - strand at 588.591 kb on - strand at 588.591 kb on - strand at 588.591 kb on - strand at 588.591 kb on - strand at 588.591 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 586,320 + -0.7 586,320 + +0.0 586,321 - +0.1 586,321 - +1.1 586,321 - -0.3 586,330 + +0.0 586,330 + -0.3 586,330 + -0.2 586,330 + -0.5 586,330 + +0.8 586,330 + -0.1 586,330 + -0.1 586,331 - -0.2 586,331 - +0.2 586,331 - -0.6 586,534 + GFF1732 0.16 +0.2 586,534 + GFF1732 0.16 +0.4 586,534 + GFF1732 0.16 +0.5 586,535 - GFF1732 0.16 +0.1 586,535 - GFF1732 0.16 +0.0 586,535 - GFF1732 0.16 +0.4 586,535 - GFF1732 0.16 -0.1 586,645 + GFF1732 0.28 -0.1 586,645 + GFF1732 0.28 +0.1 586,646 - GFF1732 0.28 -0.2 586,879 + GFF1732 0.54 +0.2 586,879 + GFF1732 0.54 +0.1 586,880 - GFF1732 0.54 +0.3 587,095 + GFF1732 0.78 -0.9 587,095 + GFF1732 0.78 +0.1 587,095 + GFF1732 0.78 +1.0 587,096 - GFF1732 0.78 -0.2 587,096 - GFF1732 0.78 -0.6 587,096 - GFF1732 0.78 +0.5 587,096 - GFF1732 0.78 +0.1 587,096 - GFF1732 0.78 +1.5 587,096 - GFF1732 0.78 +0.4 587,310 + -0.4 587,311 - +1.7 587,538 + GFF1733 0.32 -0.9 587,538 + GFF1733 0.32 -1.9 587,539 - GFF1733 0.32 -1.1 587,539 - GFF1733 0.32 -1.3 587,539 - GFF1733 0.32 -0.0 587,715 + GFF1733 0.56 -2.6 587,715 + GFF1733 0.56 -2.1 587,715 + GFF1733 0.56 -0.5 587,715 + GFF1733 0.56 -3.5 587,715 + GFF1733 0.56 -0.7 587,715 + GFF1733 0.56 -0.9 587,715 + GFF1733 0.56 -1.3 587,715 + GFF1733 0.56 -2.1 587,715 + GFF1733 0.56 -1.5 587,715 + GFF1733 0.56 -1.4 587,715 + GFF1733 0.56 -1.3 587,715 + GFF1733 0.56 -0.9 587,716 - GFF1733 0.56 -1.5 587,716 - GFF1733 0.56 -2.7 587,716 - GFF1733 0.56 +0.1 587,716 - GFF1733 0.56 +0.1 587,716 - GFF1733 0.56 -1.6 587,739 + GFF1733 0.59 -0.9 587,739 + GFF1733 0.59 -0.3 587,739 + GFF1733 0.59 -1.1 587,739 + GFF1733 0.59 -1.1 587,739 + GFF1733 0.59 -1.3 587,739 + GFF1733 0.59 -2.1 587,740 - GFF1733 0.59 +0.7 587,740 - GFF1733 0.59 -1.8 587,740 - GFF1733 0.59 -1.6 587,740 - GFF1733 0.59 +0.4 587,740 - GFF1733 0.59 -0.9 587,740 - GFF1733 0.59 -3.0 587,825 - GFF1733 0.70 -0.7 587,928 + GFF1733 0.84 -1.6 587,928 + GFF1733 0.84 -1.9 587,928 + GFF1733 0.84 -1.9 587,928 + GFF1733 0.84 -2.0 587,928 + GFF1733 0.84 -0.9 587,928 + GFF1733 0.84 -0.7 587,928 + GFF1733 0.84 -1.0 587,929 - GFF1733 0.84 -1.8 587,929 - GFF1733 0.84 +0.7 587,929 - GFF1733 0.84 -1.9 587,929 - GFF1733 0.84 -1.3 587,929 - GFF1733 0.84 -1.1 587,929 - GFF1733 0.84 -0.1 587,929 - GFF1733 0.84 -1.2 587,929 - GFF1733 0.84 +0.1 588,590 + -0.3 588,590 + +0.0 588,591 - -1.0 588,591 - -0.9 588,591 - -0.6 588,591 - -1.1 588,591 - -2.4 588,591 - +0.0 588,591 - +0.1
Or see this region's nucleotide sequence