Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1676 and GFF1677 are separated by 284 nucleotides GFF1677 and GFF1678 are separated by 69 nucleotides GFF1678 and GFF1679 are separated by 87 nucleotides GFF1679 and GFF1680 are separated by 29 nucleotides
GFF1676 - Tyrosyl-tRNA synthetase (EC 6.1.1.1), at 529,932 to 531,182
GFF1676
GFF1677 - Peptidase, M23/M37 family, at 531,467 to 532,747
GFF1677
GFF1678 - probable iron binding protein from the HesB_IscA_SufA family, at 532,817 to 533,182
GFF1678
GFF1679 - Integral membrane protein CcmA involved in cell shape determination, at 533,270 to 533,668
GFF1679
GFF1680 - FIG00761799: membrane protein, at 533,698 to 534,405
GFF1680
Position (kb) 531
532
533 Strain fitness (log2 ratio) -2
-1
0
1
2 at 531.183 kb on - strand at 531.183 kb on - strand at 531.219 kb on + strand at 531.219 kb on + strand at 531.220 kb on - strand at 531.224 kb on + strand at 531.225 kb on - strand at 531.247 kb on + strand at 531.247 kb on + strand at 531.248 kb on - strand at 531.270 kb on + strand at 531.270 kb on + strand at 531.271 kb on - strand at 531.271 kb on - strand at 531.271 kb on - strand at 531.399 kb on + strand at 531.399 kb on + strand at 532.091 kb on + strand, within GFF1677 at 532.091 kb on + strand, within GFF1677 at 532.091 kb on + strand, within GFF1677 at 532.214 kb on + strand, within GFF1677 at 532.217 kb on + strand, within GFF1677 at 532.217 kb on + strand, within GFF1677 at 532.218 kb on - strand, within GFF1677 at 532.292 kb on + strand, within GFF1677 at 532.349 kb on + strand, within GFF1677 at 532.439 kb on + strand, within GFF1677 at 532.439 kb on + strand, within GFF1677 at 532.745 kb on + strand at 532.745 kb on + strand at 532.746 kb on - strand at 532.746 kb on - strand at 532.746 kb on - strand at 532.746 kb on - strand at 532.746 kb on - strand at 532.746 kb on - strand at 532.807 kb on + strand at 533.188 kb on - strand at 533.188 kb on - strand at 533.230 kb on - strand at 533.242 kb on + strand at 533.245 kb on + strand at 533.245 kb on + strand at 533.245 kb on + strand at 533.245 kb on + strand at 533.245 kb on + strand at 533.245 kb on + strand at 533.245 kb on + strand at 533.246 kb on - strand at 533.379 kb on + strand, within GFF1679 at 533.379 kb on + strand, within GFF1679 at 533.380 kb on - strand, within GFF1679 at 533.380 kb on - strand, within GFF1679 at 533.380 kb on - strand, within GFF1679 at 533.380 kb on - strand, within GFF1679 at 533.380 kb on - strand, within GFF1679 at 533.380 kb on - strand, within GFF1679 at 533.380 kb on - strand, within GFF1679 at 533.380 kb on - strand, within GFF1679 at 533.699 kb on + strand at 533.699 kb on + strand at 533.700 kb on - strand at 533.700 kb on - strand at 533.700 kb on - strand at 533.700 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 531,183 - +0.7 531,183 - -0.8 531,219 + +0.4 531,219 + +0.1 531,220 - +0.1 531,224 + +1.1 531,225 - -0.1 531,247 + +1.2 531,247 + -0.2 531,248 - +0.6 531,270 + +0.3 531,270 + -0.2 531,271 - +1.1 531,271 - -0.1 531,271 - -0.5 531,399 + -0.9 531,399 + +0.5 532,091 + GFF1677 0.49 -0.2 532,091 + GFF1677 0.49 +0.7 532,091 + GFF1677 0.49 +0.5 532,214 + GFF1677 0.58 +0.7 532,217 + GFF1677 0.59 -1.3 532,217 + GFF1677 0.59 -0.3 532,218 - GFF1677 0.59 -1.4 532,292 + GFF1677 0.64 -0.3 532,349 + GFF1677 0.69 -0.1 532,439 + GFF1677 0.76 +0.1 532,439 + GFF1677 0.76 -0.3 532,745 + -0.1 532,745 + -0.0 532,746 - -0.7 532,746 - +0.0 532,746 - +0.4 532,746 - +0.5 532,746 - -1.1 532,746 - -0.5 532,807 + -0.4 533,188 - -0.5 533,188 - -0.9 533,230 - -0.2 533,242 + -0.5 533,245 + +0.3 533,245 + +0.2 533,245 + -2.2 533,245 + +0.3 533,245 + -0.5 533,245 + +0.3 533,245 + -1.6 533,246 - -0.4 533,379 + GFF1679 0.27 -0.2 533,379 + GFF1679 0.27 -0.3 533,380 - GFF1679 0.28 +0.2 533,380 - GFF1679 0.28 -0.1 533,380 - GFF1679 0.28 +2.3 533,380 - GFF1679 0.28 -0.3 533,380 - GFF1679 0.28 -0.0 533,380 - GFF1679 0.28 -1.2 533,380 - GFF1679 0.28 -0.3 533,380 - GFF1679 0.28 +0.7 533,699 + -0.3 533,699 + -0.0 533,700 - -0.1 533,700 - +1.2 533,700 - +0.1 533,700 - -0.4
Or see this region's nucleotide sequence