Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF164 and GFF165 are separated by 124 nucleotides GFF165 and GFF166 are separated by 10 nucleotides GFF166 and GFF167 are separated by 337 nucleotides GFF167 and GFF168 are separated by 33 nucleotides
GFF164 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180), at 177,901 to 178,947
GFF164
GFF165 - FIG00932121: hypothetical protein, at 179,072 to 179,527
GFF165
GFF166 - Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17), at 179,538 to 181,406
GFF166
GFF167 - FIG01200701: possible membrane protein, at 181,744 to 182,283
GFF167
GFF168 - Bll6585 protein, at 182,317 to 184,329
GFF168
Position (kb) 179
180
181
182 Strain fitness (log2 ratio) -1
0
1
2 at 178.565 kb on + strand, within GFF164 at 178.566 kb on - strand, within GFF164 at 179.021 kb on - strand at 179.021 kb on - strand at 179.121 kb on + strand, within GFF165 at 179.121 kb on + strand, within GFF165 at 179.122 kb on - strand, within GFF165 at 179.122 kb on - strand, within GFF165 at 179.455 kb on - strand, within GFF165 at 179.470 kb on - strand, within GFF165 at 179.578 kb on + strand at 179.578 kb on + strand at 179.578 kb on + strand at 179.579 kb on - strand at 179.639 kb on - strand at 180.914 kb on - strand, within GFF166 at 180.959 kb on - strand, within GFF166 at 180.959 kb on - strand, within GFF166 at 181.252 kb on + strand at 181.252 kb on + strand at 181.252 kb on + strand at 181.557 kb on - strand at 181.644 kb on + strand at 181.644 kb on + strand at 181.645 kb on - strand at 181.687 kb on - strand at 181.687 kb on - strand at 182.053 kb on + strand, within GFF167 at 182.054 kb on - strand, within GFF167 at 182.171 kb on - strand, within GFF167
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 178,565 + GFF164 0.63 +0.1 178,566 - GFF164 0.64 +0.5 179,021 - +0.0 179,021 - -0.1 179,121 + GFF165 0.11 +0.4 179,121 + GFF165 0.11 +0.9 179,122 - GFF165 0.11 +2.2 179,122 - GFF165 0.11 +2.1 179,455 - GFF165 0.84 +0.3 179,470 - GFF165 0.87 -0.2 179,578 + -0.2 179,578 + +1.7 179,578 + +1.1 179,579 - -0.4 179,639 - +0.8 180,914 - GFF166 0.74 +0.7 180,959 - GFF166 0.76 -0.0 180,959 - GFF166 0.76 +0.2 181,252 + -0.0 181,252 + -0.3 181,252 + +1.0 181,557 - +0.7 181,644 + -0.4 181,644 + -0.5 181,645 - -0.7 181,687 - +0.1 181,687 - +0.4 182,053 + GFF167 0.57 -0.3 182,054 - GFF167 0.57 -0.6 182,171 - GFF167 0.79 -0.1
Or see this region's nucleotide sequence