Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1646 and GFF1647 are separated by 24 nucleotides GFF1647 and GFF1648 are separated by 19 nucleotides GFF1648 and GFF1649 are separated by 2 nucleotides GFF1649 and GFF1650 overlap by 4 nucleotides
GFF1646 - Probable racemase, at 501,793 to 502,992
GFF1646
GFF1647 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 503,017 to 504,180
GFF1647
GFF1648 - (De)hydratase mit MaoC domain, at 504,200 to 504,601
GFF1648
GFF1649 - Acyl dehydratase, MaoC-like domain (EC 2.3.1.8), at 504,604 to 505,050
GFF1649
GFF1650 - blr3308; hypothetical protein, at 505,047 to 505,352
GFF1650
Position (kb) 503
504
505 Strain fitness (log2 ratio) -2
-1
0
1 at 502.340 kb on - strand, within GFF1646 at 502.432 kb on + strand, within GFF1646 at 502.432 kb on + strand, within GFF1646 at 502.432 kb on + strand, within GFF1646 at 502.433 kb on - strand, within GFF1646 at 502.433 kb on - strand, within GFF1646 at 502.433 kb on - strand, within GFF1646 at 502.435 kb on + strand, within GFF1646 at 502.492 kb on + strand, within GFF1646 at 502.738 kb on + strand, within GFF1646 at 502.738 kb on + strand, within GFF1646 at 502.739 kb on - strand, within GFF1646 at 503.026 kb on + strand at 503.306 kb on - strand, within GFF1647 at 503.347 kb on + strand, within GFF1647 at 503.347 kb on + strand, within GFF1647 at 503.989 kb on + strand, within GFF1647 at 503.989 kb on + strand, within GFF1647 at 504.109 kb on + strand at 504.272 kb on + strand, within GFF1648 at 504.272 kb on + strand, within GFF1648 at 504.272 kb on + strand, within GFF1648 at 504.272 kb on + strand, within GFF1648 at 504.273 kb on - strand, within GFF1648 at 504.273 kb on - strand, within GFF1648 at 504.273 kb on - strand, within GFF1648 at 504.273 kb on - strand, within GFF1648 at 504.305 kb on - strand, within GFF1648 at 504.306 kb on - strand, within GFF1648 at 504.607 kb on + strand at 504.607 kb on + strand at 504.607 kb on + strand at 504.608 kb on - strand at 504.608 kb on - strand at 504.608 kb on - strand at 504.608 kb on - strand at 504.691 kb on + strand, within GFF1649 at 504.692 kb on - strand, within GFF1649 at 504.692 kb on - strand, within GFF1649 at 504.740 kb on - strand, within GFF1649
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 502,340 - GFF1646 0.46 -0.1 502,432 + GFF1646 0.53 +1.0 502,432 + GFF1646 0.53 +1.1 502,432 + GFF1646 0.53 +0.5 502,433 - GFF1646 0.53 -0.9 502,433 - GFF1646 0.53 -0.1 502,433 - GFF1646 0.53 -0.1 502,435 + GFF1646 0.54 -0.1 502,492 + GFF1646 0.58 +0.3 502,738 + GFF1646 0.79 -0.2 502,738 + GFF1646 0.79 -0.5 502,739 - GFF1646 0.79 -0.1 503,026 + -1.7 503,306 - GFF1647 0.25 -0.0 503,347 + GFF1647 0.28 +0.8 503,347 + GFF1647 0.28 -1.9 503,989 + GFF1647 0.84 -0.7 503,989 + GFF1647 0.84 -0.9 504,109 + -0.3 504,272 + GFF1648 0.18 -0.2 504,272 + GFF1648 0.18 -0.3 504,272 + GFF1648 0.18 +0.1 504,272 + GFF1648 0.18 -1.6 504,273 - GFF1648 0.18 +0.7 504,273 - GFF1648 0.18 -0.1 504,273 - GFF1648 0.18 -0.5 504,273 - GFF1648 0.18 +0.1 504,305 - GFF1648 0.26 +0.4 504,306 - GFF1648 0.26 +0.1 504,607 + +0.7 504,607 + +0.1 504,607 + -0.4 504,608 - +0.3 504,608 - -0.3 504,608 - +0.1 504,608 - +0.3 504,691 + GFF1649 0.19 -0.2 504,692 - GFF1649 0.20 -0.7 504,692 - GFF1649 0.20 -0.1 504,740 - GFF1649 0.30 -0.3
Or see this region's nucleotide sequence