Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1611 and GFF1612 are separated by 5 nucleotides GFF1612 and GFF1613 are separated by 4 nucleotides GFF1613 and GFF1614 are separated by 21 nucleotides
GFF1611 - Glycine cleavage system transcriptional activator, at 465,005 to 466,033
GFF1611
GFF1612 - Membrane protein, putative, at 466,039 to 466,956
GFF1612
GFF1613 - 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2), at 466,961 to 467,677
GFF1613
GFF1614 - Soluble lytic murein transglycosylase precursor (EC 3.2.1.-), at 467,699 to 469,660
GFF1614
Position (kb) 466
467 Strain fitness (log2 ratio) -2
-1
0
1 at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.747 kb on - strand, within GFF1611 at 465.747 kb on - strand, within GFF1611 at 465.747 kb on - strand, within GFF1611 at 465.747 kb on - strand, within GFF1611 at 465.747 kb on - strand, within GFF1611 at 465.747 kb on - strand, within GFF1611 at 465.747 kb on - strand, within GFF1611 at 465.755 kb on + strand, within GFF1611 at 465.755 kb on + strand, within GFF1611 at 465.755 kb on + strand, within GFF1611 at 465.755 kb on + strand, within GFF1611 at 465.755 kb on + strand, within GFF1611 at 465.756 kb on - strand, within GFF1611 at 465.756 kb on - strand, within GFF1611 at 465.756 kb on - strand, within GFF1611 at 465.893 kb on + strand, within GFF1611 at 465.893 kb on + strand, within GFF1611 at 465.894 kb on - strand, within GFF1611 at 466.153 kb on + strand, within GFF1612 at 466.153 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.214 kb on - strand, within GFF1612 at 466.214 kb on - strand, within GFF1612 at 466.214 kb on - strand, within GFF1612 at 466.415 kb on + strand, within GFF1612 at 466.416 kb on - strand, within GFF1612 at 466.550 kb on - strand, within GFF1612 at 466.613 kb on + strand, within GFF1612 at 466.613 kb on + strand, within GFF1612 at 466.614 kb on - strand, within GFF1612 at 466.614 kb on - strand, within GFF1612 at 466.614 kb on - strand, within GFF1612 at 466.792 kb on + strand, within GFF1612 at 466.792 kb on + strand, within GFF1612 at 466.897 kb on + strand at 466.898 kb on - strand at 466.955 kb on - strand at 467.037 kb on + strand, within GFF1613 at 467.113 kb on - strand, within GFF1613 at 467.263 kb on - strand, within GFF1613 at 467.611 kb on + strand at 467.611 kb on + strand at 467.864 kb on + strand at 467.865 kb on - strand at 467.942 kb on + strand, within GFF1614 at 467.942 kb on + strand, within GFF1614 at 467.943 kb on - strand, within GFF1614 at 467.943 kb on - strand, within GFF1614
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 465,746 + GFF1611 0.72 +0.4 465,746 + GFF1611 0.72 +0.4 465,746 + GFF1611 0.72 +0.1 465,746 + GFF1611 0.72 -0.1 465,746 + GFF1611 0.72 -0.6 465,746 + GFF1611 0.72 -0.1 465,746 + GFF1611 0.72 -0.1 465,746 + GFF1611 0.72 -0.3 465,746 + GFF1611 0.72 -0.5 465,746 + GFF1611 0.72 -0.1 465,746 + GFF1611 0.72 +0.1 465,747 - GFF1611 0.72 +0.5 465,747 - GFF1611 0.72 +0.0 465,747 - GFF1611 0.72 -0.4 465,747 - GFF1611 0.72 -1.6 465,747 - GFF1611 0.72 -0.3 465,747 - GFF1611 0.72 -0.6 465,747 - GFF1611 0.72 -0.5 465,755 + GFF1611 0.73 -2.2 465,755 + GFF1611 0.73 -1.4 465,755 + GFF1611 0.73 -0.3 465,755 + GFF1611 0.73 +0.7 465,755 + GFF1611 0.73 -0.1 465,756 - GFF1611 0.73 -0.4 465,756 - GFF1611 0.73 -0.1 465,756 - GFF1611 0.73 -0.3 465,893 + GFF1611 0.86 -0.6 465,893 + GFF1611 0.86 -0.7 465,894 - GFF1611 0.86 +0.0 466,153 + GFF1612 0.12 +0.2 466,153 + GFF1612 0.12 -2.1 466,213 + GFF1612 0.19 -1.3 466,213 + GFF1612 0.19 -0.7 466,213 + GFF1612 0.19 -0.7 466,213 + GFF1612 0.19 -1.0 466,213 + GFF1612 0.19 -0.4 466,213 + GFF1612 0.19 -0.1 466,213 + GFF1612 0.19 +0.1 466,213 + GFF1612 0.19 +0.4 466,214 - GFF1612 0.19 +0.1 466,214 - GFF1612 0.19 -0.1 466,214 - GFF1612 0.19 +0.0 466,415 + GFF1612 0.41 +1.0 466,416 - GFF1612 0.41 +0.3 466,550 - GFF1612 0.56 -0.4 466,613 + GFF1612 0.63 -0.2 466,613 + GFF1612 0.63 +0.2 466,614 - GFF1612 0.63 +0.0 466,614 - GFF1612 0.63 -0.6 466,614 - GFF1612 0.63 +0.4 466,792 + GFF1612 0.82 +0.1 466,792 + GFF1612 0.82 +0.7 466,897 + +0.3 466,898 - +0.3 466,955 - +0.3 467,037 + GFF1613 0.11 -0.5 467,113 - GFF1613 0.21 -2.3 467,263 - GFF1613 0.42 -0.9 467,611 + -0.7 467,611 + +0.1 467,864 + -0.2 467,865 - -1.5 467,942 + GFF1614 0.12 +0.4 467,942 + GFF1614 0.12 -0.2 467,943 - GFF1614 0.12 +1.0 467,943 - GFF1614 0.12 -0.6
Or see this region's nucleotide sequence