Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1586 and GFF1587 are separated by 1 nucleotides GFF1587 and GFF1588 overlap by 1 nucleotides GFF1588 and GFF1589 are separated by 35 nucleotides
GFF1586 - Alkanesulfonates transport system permease protein, at 442,062 to 442,826
GFF1586
GFF1587 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 442,828 to 443,121
GFF1587
GFF1588 - hypothetical protein, at 443,121 to 443,978
GFF1588
GFF1589 - (Y14336) putative extracellular protein containing predicted 35aa signal peptide, at 444,014 to 444,988
GFF1589
Position (kb) 443
444 Strain fitness (log2 ratio) -2
-1
0
1
2 at 442.174 kb on + strand, within GFF1586 at 442.174 kb on + strand, within GFF1586 at 442.174 kb on + strand, within GFF1586 at 442.175 kb on - strand, within GFF1586 at 442.175 kb on - strand, within GFF1586 at 442.175 kb on - strand, within GFF1586 at 442.175 kb on - strand, within GFF1586 at 442.175 kb on - strand, within GFF1586 at 443.227 kb on + strand, within GFF1588 at 443.227 kb on + strand, within GFF1588 at 443.228 kb on - strand, within GFF1588 at 443.228 kb on - strand, within GFF1588 at 443.470 kb on + strand, within GFF1588 at 443.471 kb on - strand, within GFF1588 at 443.567 kb on - strand, within GFF1588 at 443.588 kb on - strand, within GFF1588 at 443.588 kb on - strand, within GFF1588 at 443.588 kb on - strand, within GFF1588 at 443.603 kb on - strand, within GFF1588 at 443.677 kb on + strand, within GFF1588 at 443.866 kb on + strand, within GFF1588 at 443.866 kb on + strand, within GFF1588 at 443.866 kb on + strand, within GFF1588 at 443.866 kb on + strand, within GFF1588 at 443.866 kb on + strand, within GFF1588 at 443.866 kb on + strand, within GFF1588 at 443.867 kb on - strand, within GFF1588 at 443.867 kb on - strand, within GFF1588 at 443.867 kb on - strand, within GFF1588 at 443.893 kb on + strand at 443.894 kb on - strand at 443.894 kb on - strand at 444.307 kb on - strand, within GFF1589 at 444.468 kb on + strand, within GFF1589 at 444.469 kb on - strand, within GFF1589 at 444.531 kb on + strand, within GFF1589 at 444.531 kb on + strand, within GFF1589 at 444.531 kb on + strand, within GFF1589
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 442,174 + GFF1586 0.15 +1.7 442,174 + GFF1586 0.15 -0.3 442,174 + GFF1586 0.15 +0.9 442,175 - GFF1586 0.15 -0.2 442,175 - GFF1586 0.15 -0.3 442,175 - GFF1586 0.15 +2.1 442,175 - GFF1586 0.15 -0.7 442,175 - GFF1586 0.15 +0.2 443,227 + GFF1588 0.12 -0.8 443,227 + GFF1588 0.12 -0.6 443,228 - GFF1588 0.12 +0.0 443,228 - GFF1588 0.12 -0.1 443,470 + GFF1588 0.41 -0.5 443,471 - GFF1588 0.41 +0.1 443,567 - GFF1588 0.52 +0.1 443,588 - GFF1588 0.54 -0.6 443,588 - GFF1588 0.54 +0.7 443,588 - GFF1588 0.54 -0.0 443,603 - GFF1588 0.56 -0.1 443,677 + GFF1588 0.65 +0.2 443,866 + GFF1588 0.87 +0.7 443,866 + GFF1588 0.87 -0.3 443,866 + GFF1588 0.87 -0.3 443,866 + GFF1588 0.87 +0.2 443,866 + GFF1588 0.87 +0.2 443,866 + GFF1588 0.87 -0.3 443,867 - GFF1588 0.87 +0.7 443,867 - GFF1588 0.87 -0.2 443,867 - GFF1588 0.87 -0.5 443,893 + +0.9 443,894 - +0.2 443,894 - +0.3 444,307 - GFF1589 0.30 +0.4 444,468 + GFF1589 0.47 -0.0 444,469 - GFF1589 0.47 -0.6 444,531 + GFF1589 0.53 -0.4 444,531 + GFF1589 0.53 -0.2 444,531 + GFF1589 0.53 -1.8
Or see this region's nucleotide sequence