Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1577 and GFF1578 are separated by 3 nucleotides GFF1578 and GFF1579 are separated by 17 nucleotides GFF1579 and GFF1580 are separated by 46 nucleotides GFF1580 and GFF1581 overlap by 8 nucleotides
GFF1577 - YciL protein, at 432,618 to 432,917
GFF1577
GFF1578 - Methylisocitrate lyase (EC 4.1.3.30), at 432,921 to 433,796
GFF1578
GFF1579 - Tricarboxylate transport protein TctC, at 433,814 to 434,905
GFF1579
GFF1580 - Transcriptional regulator, LysR family, at 434,952 to 435,854
GFF1580
GFF1581 - hypothetical protein, at 435,847 to 437,343
GFF1581
Position (kb) 433
434
435 Strain fitness (log2 ratio) -1
0
1 at 432.838 kb on + strand, within GFF1577 at 432.839 kb on - strand, within GFF1577 at 432.910 kb on + strand at 432.910 kb on + strand at 432.910 kb on + strand at 432.911 kb on - strand at 432.911 kb on - strand at 432.931 kb on + strand at 432.979 kb on + strand at 432.980 kb on + strand at 432.980 kb on - strand at 433.087 kb on + strand, within GFF1578 at 433.088 kb on - strand, within GFF1578 at 433.088 kb on - strand, within GFF1578 at 433.088 kb on - strand, within GFF1578 at 433.088 kb on - strand, within GFF1578 at 433.483 kb on + strand, within GFF1578 at 433.666 kb on + strand, within GFF1578 at 433.667 kb on - strand, within GFF1578 at 434.238 kb on + strand, within GFF1579 at 434.238 kb on + strand, within GFF1579 at 434.239 kb on - strand, within GFF1579 at 434.326 kb on - strand, within GFF1579 at 434.464 kb on - strand, within GFF1579 at 434.464 kb on - strand, within GFF1579 at 434.943 kb on - strand at 435.462 kb on + strand, within GFF1580
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 432,838 + GFF1577 0.73 -1.1 432,839 - GFF1577 0.74 +0.7 432,910 + -0.7 432,910 + +0.3 432,910 + -0.3 432,911 - +0.8 432,911 - +0.4 432,931 + -0.3 432,979 + -0.6 432,980 + +0.2 432,980 - -0.9 433,087 + GFF1578 0.19 -0.4 433,088 - GFF1578 0.19 +0.0 433,088 - GFF1578 0.19 +0.5 433,088 - GFF1578 0.19 -0.1 433,088 - GFF1578 0.19 +0.4 433,483 + GFF1578 0.64 +0.6 433,666 + GFF1578 0.85 -0.0 433,667 - GFF1578 0.85 -1.3 434,238 + GFF1579 0.39 +0.7 434,238 + GFF1579 0.39 +0.4 434,239 - GFF1579 0.39 +0.2 434,326 - GFF1579 0.47 -0.4 434,464 - GFF1579 0.60 -0.1 434,464 - GFF1579 0.60 -0.7 434,943 - -0.3 435,462 + GFF1580 0.56 +0.5
Or see this region's nucleotide sequence