Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1367

Experiment: Ying_sugar7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1365 and GFF1366 overlap by 4 nucleotidesGFF1366 and GFF1367 are separated by 7 nucleotidesGFF1367 and GFF1368 are separated by 65 nucleotides GFF1365 - Putative glutathione transporter, ATP-binding component, at 220,802 to 221,878 GFF1365 GFF1366 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 221,875 to 222,849 GFF1366 GFF1367 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 222,857 to 223,768 GFF1367 GFF1368 - Putative gluthatione transporter,solute-binding component, at 223,834 to 225,420 GFF1368 Position (kb) 222 223 224Strain fitness (log2 ratio) -2 -1 0 1 2at 221.993 kb on + strand, within GFF1366at 221.994 kb on - strand, within GFF1366at 221.994 kb on - strand, within GFF1366at 221.994 kb on - strand, within GFF1366at 221.994 kb on - strand, within GFF1366at 221.994 kb on - strand, within GFF1366at 222.104 kb on + strand, within GFF1366at 222.105 kb on - strand, within GFF1366at 222.105 kb on - strand, within GFF1366at 222.167 kb on + strand, within GFF1366at 222.167 kb on + strand, within GFF1366at 222.167 kb on + strand, within GFF1366at 222.167 kb on + strand, within GFF1366at 222.168 kb on - strand, within GFF1366at 222.168 kb on - strand, within GFF1366at 222.168 kb on - strand, within GFF1366at 222.168 kb on - strand, within GFF1366at 222.533 kb on + strand, within GFF1366at 222.534 kb on - strand, within GFF1366at 222.534 kb on - strand, within GFF1366at 222.534 kb on - strand, within GFF1366at 222.978 kb on + strand, within GFF1367at 222.978 kb on + strand, within GFF1367at 222.978 kb on + strand, within GFF1367at 222.978 kb on + strand, within GFF1367at 222.978 kb on + strand, within GFF1367at 222.979 kb on - strand, within GFF1367at 222.979 kb on - strand, within GFF1367at 222.979 kb on - strand, within GFF1367at 223.185 kb on + strand, within GFF1367at 223.185 kb on + strand, within GFF1367at 223.185 kb on + strand, within GFF1367at 223.185 kb on + strand, within GFF1367at 223.185 kb on + strand, within GFF1367at 223.186 kb on - strand, within GFF1367at 223.186 kb on - strand, within GFF1367at 223.186 kb on - strand, within GFF1367at 223.186 kb on - strand, within GFF1367at 223.233 kb on + strand, within GFF1367at 223.233 kb on + strand, within GFF1367at 223.234 kb on - strand, within GFF1367at 223.234 kb on - strand, within GFF1367at 223.500 kb on + strand, within GFF1367at 223.500 kb on + strand, within GFF1367at 223.501 kb on - strand, within GFF1367at 223.501 kb on - strand, within GFF1367at 223.836 kb on - strandat 224.168 kb on + strand, within GFF1368at 224.168 kb on + strand, within GFF1368at 224.168 kb on + strand, within GFF1368at 224.168 kb on + strand, within GFF1368at 224.168 kb on + strand, within GFF1368at 224.169 kb on - strand, within GFF1368at 224.169 kb on - strand, within GFF1368at 224.169 kb on - strand, within GFF1368at 224.169 kb on - strand, within GFF1368at 224.204 kb on + strand, within GFF1368at 224.204 kb on + strand, within GFF1368at 224.204 kb on + strand, within GFF1368at 224.204 kb on + strand, within GFF1368at 224.204 kb on + strand, within GFF1368at 224.205 kb on - strand, within GFF1368at 224.205 kb on - strand, within GFF1368at 224.205 kb on - strand, within GFF1368at 224.205 kb on - strand, within GFF1368at 224.205 kb on - strand, within GFF1368at 224.205 kb on - strand, within GFF1368at 224.298 kb on - strand, within GFF1368at 224.384 kb on + strand, within GFF1368at 224.384 kb on + strand, within GFF1368at 224.385 kb on - strand, within GFF1368at 224.507 kb on + strand, within GFF1368at 224.507 kb on + strand, within GFF1368at 224.564 kb on + strand, within GFF1368at 224.750 kb on + strand, within GFF1368at 224.750 kb on + strand, within GFF1368at 224.750 kb on + strand, within GFF1368at 224.751 kb on - strand, within GFF1368

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
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221,993 + GFF1366 0.12 +0.9
221,994 - GFF1366 0.12 +0.9
221,994 - GFF1366 0.12 +0.6
221,994 - GFF1366 0.12 -0.1
221,994 - GFF1366 0.12 +0.1
221,994 - GFF1366 0.12 +0.8
222,104 + GFF1366 0.23 +0.7
222,105 - GFF1366 0.24 -0.1
222,105 - GFF1366 0.24 +0.7
222,167 + GFF1366 0.30 +0.0
222,167 + GFF1366 0.30 +0.2
222,167 + GFF1366 0.30 +0.5
222,167 + GFF1366 0.30 +0.4
222,168 - GFF1366 0.30 +1.9
222,168 - GFF1366 0.30 -0.1
222,168 - GFF1366 0.30 -1.1
222,168 - GFF1366 0.30 -1.0
222,533 + GFF1366 0.67 -0.3
222,534 - GFF1366 0.68 +0.1
222,534 - GFF1366 0.68 +1.1
222,534 - GFF1366 0.68 +0.1
222,978 + GFF1367 0.13 +0.3
222,978 + GFF1367 0.13 -0.7
222,978 + GFF1367 0.13 +0.1
222,978 + GFF1367 0.13 +0.7
222,978 + GFF1367 0.13 +0.8
222,979 - GFF1367 0.13 +0.0
222,979 - GFF1367 0.13 -0.6
222,979 - GFF1367 0.13 +0.0
223,185 + GFF1367 0.36 +0.3
223,185 + GFF1367 0.36 +0.4
223,185 + GFF1367 0.36 +0.8
223,185 + GFF1367 0.36 -0.4
223,185 + GFF1367 0.36 +0.0
223,186 - GFF1367 0.36 -0.6
223,186 - GFF1367 0.36 -2.1
223,186 - GFF1367 0.36 +1.1
223,186 - GFF1367 0.36 +0.4
223,233 + GFF1367 0.41 +0.4
223,233 + GFF1367 0.41 +0.2
223,234 - GFF1367 0.41 +0.0
223,234 - GFF1367 0.41 +0.6
223,500 + GFF1367 0.71 +1.9
223,500 + GFF1367 0.71 -0.2
223,501 - GFF1367 0.71 +1.3
223,501 - GFF1367 0.71 -0.3
223,836 - +0.2
224,168 + GFF1368 0.21 +1.4
224,168 + GFF1368 0.21 +0.7
224,168 + GFF1368 0.21 +0.1
224,168 + GFF1368 0.21 -1.3
224,168 + GFF1368 0.21 +0.2
224,169 - GFF1368 0.21 -0.4
224,169 - GFF1368 0.21 -0.0
224,169 - GFF1368 0.21 +0.1
224,169 - GFF1368 0.21 +0.1
224,204 + GFF1368 0.23 +0.8
224,204 + GFF1368 0.23 +0.5
224,204 + GFF1368 0.23 +0.1
224,204 + GFF1368 0.23 -0.5
224,204 + GFF1368 0.23 -1.4
224,205 - GFF1368 0.23 -0.1
224,205 - GFF1368 0.23 -0.2
224,205 - GFF1368 0.23 +1.7
224,205 - GFF1368 0.23 +0.1
224,205 - GFF1368 0.23 +0.4
224,205 - GFF1368 0.23 +0.9
224,298 - GFF1368 0.29 +0.6
224,384 + GFF1368 0.35 +0.0
224,384 + GFF1368 0.35 +0.9
224,385 - GFF1368 0.35 +0.9
224,507 + GFF1368 0.42 +0.7
224,507 + GFF1368 0.42 +1.3
224,564 + GFF1368 0.46 -0.9
224,750 + GFF1368 0.58 +0.4
224,750 + GFF1368 0.58 +0.1
224,750 + GFF1368 0.58 +0.3
224,751 - GFF1368 0.58 -0.1

Or see this region's nucleotide sequence