Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1331 and GFF1332 are separated by 41 nucleotides GFF1332 and GFF1333 overlap by 4 nucleotides
GFF1331 - 3-dehydroquinate synthase (EC 4.2.3.4), at 183,783 to 184,904
GFF1331
GFF1332 - Shikimate kinase I (EC 2.7.1.71), at 184,946 to 185,509
GFF1332
GFF1333 - Type IV pilus biogenesis protein PilQ, at 185,506 to 187,590
GFF1333
Position (kb) 184
185
186 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 184.102 kb on + strand, within GFF1331 at 184.315 kb on + strand, within GFF1331 at 184.316 kb on - strand, within GFF1331 at 184.405 kb on + strand, within GFF1331 at 184.405 kb on + strand, within GFF1331 at 184.406 kb on - strand, within GFF1331 at 184.406 kb on - strand, within GFF1331 at 184.406 kb on - strand, within GFF1331 at 184.406 kb on - strand, within GFF1331 at 184.525 kb on + strand, within GFF1331 at 184.525 kb on + strand, within GFF1331 at 184.525 kb on + strand, within GFF1331 at 184.525 kb on + strand, within GFF1331 at 184.525 kb on + strand, within GFF1331 at 184.525 kb on + strand, within GFF1331 at 184.526 kb on - strand, within GFF1331 at 184.526 kb on - strand, within GFF1331 at 184.526 kb on - strand, within GFF1331 at 184.654 kb on + strand, within GFF1331 at 184.654 kb on + strand, within GFF1331 at 184.655 kb on - strand, within GFF1331 at 184.655 kb on - strand, within GFF1331 at 184.655 kb on - strand, within GFF1331 at 184.696 kb on + strand, within GFF1331 at 184.697 kb on - strand, within GFF1331 at 184.697 kb on - strand, within GFF1331 at 184.697 kb on - strand, within GFF1331 at 184.732 kb on + strand, within GFF1331 at 184.795 kb on + strand at 184.795 kb on + strand at 184.795 kb on + strand at 184.796 kb on - strand at 184.796 kb on - strand at 184.840 kb on + strand at 184.840 kb on + strand at 184.841 kb on - strand at 184.841 kb on - strand at 184.841 kb on - strand at 184.841 kb on - strand at 184.841 kb on - strand at 184.841 kb on - strand at 184.841 kb on - strand at 184.841 kb on - strand at 184.918 kb on - strand at 184.947 kb on + strand at 184.948 kb on - strand at 185.086 kb on - strand, within GFF1332 at 185.181 kb on + strand, within GFF1332 at 185.182 kb on - strand, within GFF1332 at 185.182 kb on - strand, within GFF1332 at 185.208 kb on + strand, within GFF1332 at 185.209 kb on - strand, within GFF1332 at 185.209 kb on - strand, within GFF1332 at 185.209 kb on - strand, within GFF1332 at 185.668 kb on - strand at 185.668 kb on - strand at 185.668 kb on - strand at 185.981 kb on + strand, within GFF1333 at 186.134 kb on + strand, within GFF1333 at 186.134 kb on + strand, within GFF1333 at 186.135 kb on - strand, within GFF1333 at 186.135 kb on - strand, within GFF1333 at 186.135 kb on - strand, within GFF1333 at 186.473 kb on + strand, within GFF1333 at 186.473 kb on + strand, within GFF1333 at 186.474 kb on - strand, within GFF1333 at 186.474 kb on - strand, within GFF1333 at 186.474 kb on - strand, within GFF1333 at 186.474 kb on - strand, within GFF1333 at 186.474 kb on - strand, within GFF1333
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 184,102 + GFF1331 0.28 -1.6 184,315 + GFF1331 0.47 -2.3 184,316 - GFF1331 0.48 -1.6 184,405 + GFF1331 0.55 -5.3 184,405 + GFF1331 0.55 -3.3 184,406 - GFF1331 0.56 -2.6 184,406 - GFF1331 0.56 -0.9 184,406 - GFF1331 0.56 -3.7 184,406 - GFF1331 0.56 -2.8 184,525 + GFF1331 0.66 -2.1 184,525 + GFF1331 0.66 -4.4 184,525 + GFF1331 0.66 -2.8 184,525 + GFF1331 0.66 -2.9 184,525 + GFF1331 0.66 -3.8 184,525 + GFF1331 0.66 -4.4 184,526 - GFF1331 0.66 -1.6 184,526 - GFF1331 0.66 -4.0 184,526 - GFF1331 0.66 -3.6 184,654 + GFF1331 0.78 -5.7 184,654 + GFF1331 0.78 -3.6 184,655 - GFF1331 0.78 -5.0 184,655 - GFF1331 0.78 -6.1 184,655 - GFF1331 0.78 -3.8 184,696 + GFF1331 0.81 -2.6 184,697 - GFF1331 0.81 -1.9 184,697 - GFF1331 0.81 -2.6 184,697 - GFF1331 0.81 -3.3 184,732 + GFF1331 0.85 -1.6 184,795 + -2.8 184,795 + -5.0 184,795 + -3.0 184,796 - -4.0 184,796 - -1.9 184,840 + -1.3 184,840 + -2.9 184,841 - -2.6 184,841 - -2.9 184,841 - -4.2 184,841 - -1.1 184,841 - -2.3 184,841 - -3.9 184,841 - -4.4 184,841 - -4.7 184,918 - -4.0 184,947 + +0.3 184,948 - +0.4 185,086 - GFF1332 0.25 -2.3 185,181 + GFF1332 0.42 -3.9 185,182 - GFF1332 0.42 -3.5 185,182 - GFF1332 0.42 -0.3 185,208 + GFF1332 0.46 -4.8 185,209 - GFF1332 0.47 -5.1 185,209 - GFF1332 0.47 -3.1 185,209 - GFF1332 0.47 -1.9 185,668 - +1.1 185,668 - -0.3 185,668 - +0.0 185,981 + GFF1333 0.23 +0.6 186,134 + GFF1333 0.30 +0.5 186,134 + GFF1333 0.30 +0.0 186,135 - GFF1333 0.30 +1.6 186,135 - GFF1333 0.30 +0.5 186,135 - GFF1333 0.30 +0.5 186,473 + GFF1333 0.46 +1.0 186,473 + GFF1333 0.46 +0.3 186,474 - GFF1333 0.46 +0.9 186,474 - GFF1333 0.46 +0.7 186,474 - GFF1333 0.46 +0.5 186,474 - GFF1333 0.46 +1.6 186,474 - GFF1333 0.46 +0.2
Or see this region's nucleotide sequence