Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1289 and GFF1290 are separated by 124 nucleotides GFF1290 and GFF2348 are separated by 32 nucleotides GFF2348 and GFF1291 are separated by 21 nucleotides GFF1291 and GFF1292 are separated by 39 nucleotides GFF1292 and GFF1293 are separated by 115 nucleotides
GFF1289 - Peptidase, M23/M37 family, at 147,438 to 148,343
GFF1289
GFF1290 - Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives, at 148,468 to 148,758
GFF1290
GFF2348 - tRNA-Thr-TGT, at 148,791 to 148,863
GFF2348
GFF1291 - ClpXP protease specificity-enhancing factor / Stringent starvation protein B, at 148,885 to 149,418
GFF1291
GFF1292 - Stringent starvation protein A, at 149,458 to 150,069
GFF1292
GFF1293 - ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit, at 150,185 to 150,940
GFF1293
Position (kb) 148
149
150 Strain fitness (log2 ratio) -2
-1
0
1 at 148.165 kb on + strand, within GFF1289 at 148.165 kb on + strand, within GFF1289 at 148.165 kb on + strand, within GFF1289 at 148.165 kb on + strand, within GFF1289 at 148.165 kb on + strand, within GFF1289 at 148.166 kb on - strand, within GFF1289 at 148.166 kb on - strand, within GFF1289 at 148.166 kb on - strand, within GFF1289 at 148.166 kb on - strand, within GFF1289 at 148.264 kb on + strand at 148.264 kb on + strand at 148.264 kb on + strand at 148.264 kb on + strand at 148.264 kb on + strand at 148.264 kb on + strand at 148.264 kb on + strand at 148.265 kb on - strand at 148.265 kb on - strand at 148.265 kb on - strand at 148.265 kb on - strand at 148.265 kb on - strand at 148.265 kb on - strand at 148.265 kb on - strand at 148.265 kb on - strand at 148.265 kb on - strand at 148.265 kb on - strand at 148.377 kb on - strand at 148.377 kb on - strand at 148.377 kb on - strand at 148.377 kb on - strand at 148.377 kb on - strand at 148.377 kb on - strand at 148.394 kb on + strand at 148.394 kb on + strand at 148.394 kb on + strand at 148.394 kb on + strand at 148.394 kb on + strand at 148.394 kb on + strand at 148.394 kb on + strand at 148.394 kb on + strand at 148.395 kb on - strand at 148.395 kb on - strand at 148.886 kb on + strand at 148.886 kb on + strand at 148.886 kb on + strand at 148.887 kb on - strand at 148.887 kb on - strand at 148.954 kb on - strand, within GFF1291 at 149.112 kb on + strand, within GFF1291 at 149.113 kb on - strand, within GFF1291 at 149.113 kb on - strand, within GFF1291 at 149.113 kb on - strand, within GFF1291 at 149.135 kb on + strand, within GFF1291 at 149.135 kb on + strand, within GFF1291 at 149.135 kb on + strand, within GFF1291 at 149.327 kb on + strand, within GFF1291 at 149.327 kb on + strand, within GFF1291 at 149.327 kb on + strand, within GFF1291 at 149.327 kb on + strand, within GFF1291 at 149.328 kb on - strand, within GFF1291 at 149.328 kb on - strand, within GFF1291 at 149.378 kb on + strand at 149.379 kb on - strand at 149.379 kb on - strand at 149.379 kb on - strand at 149.459 kb on + strand at 149.459 kb on + strand at 149.459 kb on + strand at 149.459 kb on + strand at 149.459 kb on + strand at 149.459 kb on + strand at 149.460 kb on - strand at 150.084 kb on - strand at 150.205 kb on - strand at 150.316 kb on - strand, within GFF1293 at 150.346 kb on - strand, within GFF1293 at 150.346 kb on - strand, within GFF1293
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 148,165 + GFF1289 0.80 -0.1 148,165 + GFF1289 0.80 +0.1 148,165 + GFF1289 0.80 +1.1 148,165 + GFF1289 0.80 +0.4 148,165 + GFF1289 0.80 +0.2 148,166 - GFF1289 0.80 -0.5 148,166 - GFF1289 0.80 -0.2 148,166 - GFF1289 0.80 +0.1 148,166 - GFF1289 0.80 -0.3 148,264 + -0.2 148,264 + +0.3 148,264 + +0.0 148,264 + -0.6 148,264 + -0.3 148,264 + -0.7 148,264 + +0.1 148,265 - +0.5 148,265 - -0.3 148,265 - -0.0 148,265 - +0.5 148,265 - +1.5 148,265 - -0.4 148,265 - -0.7 148,265 - -0.1 148,265 - +0.2 148,265 - -0.0 148,377 - +0.3 148,377 - -0.2 148,377 - +0.7 148,377 - +0.3 148,377 - +0.7 148,377 - +0.5 148,394 + -0.6 148,394 + -0.4 148,394 + -1.3 148,394 + +0.7 148,394 + +1.4 148,394 + -0.1 148,394 + -0.3 148,394 + +0.7 148,395 - +0.7 148,395 - +1.4 148,886 + +1.2 148,886 + -0.4 148,886 + +0.3 148,887 - +0.1 148,887 - +1.0 148,954 - GFF1291 0.13 -0.1 149,112 + GFF1291 0.43 -2.1 149,113 - GFF1291 0.43 +0.1 149,113 - GFF1291 0.43 -0.3 149,113 - GFF1291 0.43 +0.2 149,135 + GFF1291 0.47 -0.9 149,135 + GFF1291 0.47 -0.0 149,135 + GFF1291 0.47 +0.2 149,327 + GFF1291 0.83 -0.2 149,327 + GFF1291 0.83 -0.3 149,327 + GFF1291 0.83 -0.1 149,327 + GFF1291 0.83 -2.3 149,328 - GFF1291 0.83 +1.3 149,328 - GFF1291 0.83 -0.2 149,378 + -0.2 149,379 - -0.5 149,379 - +0.4 149,379 - +0.4 149,459 + +0.0 149,459 + +0.2 149,459 + -0.4 149,459 + +0.1 149,459 + +0.4 149,459 + -0.3 149,460 - +0.3 150,084 - -0.5 150,205 - +0.4 150,316 - GFF1293 0.17 -2.1 150,346 - GFF1293 0.21 -1.6 150,346 - GFF1293 0.21 -2.1
Or see this region's nucleotide sequence