Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1280

Experiment: Ying_sugar7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1279 and GFF1280 are separated by 32 nucleotidesGFF1280 and GFF1281 overlap by 1 nucleotidesGFF1281 and GFF1282 are separated by 101 nucleotides GFF1279 - Type IV fimbrial assembly, ATPase PilB, at 136,417 to 138,111 GFF1279 GFF1280 - Type IV fimbrial assembly protein PilC, at 138,144 to 139,361 GFF1280 GFF1281 - Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-), at 139,361 to 140,224 GFF1281 GFF1282 - Dephospho-CoA kinase (EC 2.7.1.24), at 140,326 to 140,835 GFF1282 Position (kb) 138 139 140Strain fitness (log2 ratio) -1 0 1 2at 137.269 kb on - strand, within GFF1279at 137.298 kb on + strand, within GFF1279at 137.315 kb on - strand, within GFF1279at 137.315 kb on - strand, within GFF1279at 137.416 kb on + strand, within GFF1279at 137.416 kb on + strand, within GFF1279at 137.416 kb on + strand, within GFF1279at 137.416 kb on + strand, within GFF1279at 137.416 kb on + strand, within GFF1279at 137.416 kb on + strand, within GFF1279at 137.417 kb on - strand, within GFF1279at 137.417 kb on - strand, within GFF1279at 137.417 kb on - strand, within GFF1279at 137.417 kb on - strand, within GFF1279at 137.417 kb on - strand, within GFF1279at 137.417 kb on - strand, within GFF1279at 137.518 kb on + strand, within GFF1279at 137.875 kb on + strand, within GFF1279at 137.875 kb on + strand, within GFF1279at 137.875 kb on + strand, within GFF1279at 137.875 kb on + strand, within GFF1279at 137.875 kb on + strand, within GFF1279at 137.875 kb on + strand, within GFF1279at 137.875 kb on + strand, within GFF1279at 137.875 kb on + strand, within GFF1279at 137.875 kb on + strand, within GFF1279at 137.876 kb on - strand, within GFF1279at 137.876 kb on - strand, within GFF1279at 137.876 kb on - strand, within GFF1279at 137.876 kb on - strand, within GFF1279at 137.911 kb on + strand, within GFF1279at 137.911 kb on + strand, within GFF1279at 137.912 kb on - strand, within GFF1279at 137.932 kb on + strand, within GFF1279at 137.932 kb on + strand, within GFF1279at 137.932 kb on + strand, within GFF1279at 137.932 kb on + strand, within GFF1279at 137.933 kb on - strand, within GFF1279at 137.933 kb on - strand, within GFF1279at 137.933 kb on - strand, within GFF1279at 137.933 kb on - strand, within GFF1279at 138.120 kb on + strandat 138.120 kb on + strandat 138.120 kb on + strandat 138.121 kb on - strandat 138.121 kb on - strandat 138.157 kb on + strandat 138.525 kb on + strand, within GFF1280at 138.525 kb on + strand, within GFF1280at 138.526 kb on - strand, within GFF1280at 138.540 kb on + strand, within GFF1280at 138.540 kb on + strand, within GFF1280at 138.540 kb on + strand, within GFF1280at 138.540 kb on + strand, within GFF1280at 138.540 kb on + strand, within GFF1280at 138.575 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.609 kb on + strand, within GFF1280at 138.610 kb on - strand, within GFF1280at 138.610 kb on - strand, within GFF1280at 138.610 kb on - strand, within GFF1280at 138.610 kb on - strand, within GFF1280at 138.610 kb on - strand, within GFF1280at 138.610 kb on - strand, within GFF1280at 138.610 kb on - strand, within GFF1280at 138.644 kb on - strand, within GFF1280at 138.660 kb on + strand, within GFF1280at 138.660 kb on + strand, within GFF1280at 138.660 kb on + strand, within GFF1280at 138.661 kb on - strand, within GFF1280at 138.813 kb on + strand, within GFF1280at 138.813 kb on + strand, within GFF1280at 138.852 kb on + strand, within GFF1280at 138.852 kb on + strand, within GFF1280at 138.852 kb on + strand, within GFF1280at 138.853 kb on - strand, within GFF1280at 138.853 kb on - strand, within GFF1280at 138.853 kb on - strand, within GFF1280at 138.853 kb on - strand, within GFF1280at 138.853 kb on - strand, within GFF1280at 138.937 kb on + strand, within GFF1280at 138.937 kb on + strand, within GFF1280at 138.938 kb on - strand, within GFF1280at 138.938 kb on - strand, within GFF1280at 139.056 kb on + strand, within GFF1280at 139.056 kb on + strand, within GFF1280at 139.056 kb on + strand, within GFF1280at 139.057 kb on - strand, within GFF1280at 139.221 kb on + strand, within GFF1280at 139.221 kb on + strand, within GFF1280at 139.221 kb on + strand, within GFF1280at 139.221 kb on + strand, within GFF1280at 139.221 kb on + strand, within GFF1280at 139.221 kb on + strand, within GFF1280at 139.221 kb on + strand, within GFF1280at 139.221 kb on + strand, within GFF1280at 139.222 kb on - strand, within GFF1280at 139.222 kb on - strand, within GFF1280at 139.222 kb on - strand, within GFF1280at 139.326 kb on + strandat 139.326 kb on + strandat 139.326 kb on + strandat 139.326 kb on + strandat 139.326 kb on + strandat 139.326 kb on + strandat 139.326 kb on + strandat 139.326 kb on + strandat 139.327 kb on - strandat 139.327 kb on - strandat 139.327 kb on - strandat 139.327 kb on - strandat 139.327 kb on - strandat 139.327 kb on - strandat 139.327 kb on - strandat 139.327 kb on - strandat 139.327 kb on - strandat 139.327 kb on - strandat 139.327 kb on - strandat 139.628 kb on + strand, within GFF1281at 139.628 kb on + strand, within GFF1281at 139.629 kb on - strand, within GFF1281at 139.683 kb on - strand, within GFF1281at 139.952 kb on + strand, within GFF1281at 139.952 kb on + strand, within GFF1281at 139.953 kb on - strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.135 kb on + strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281at 140.136 kb on - strand, within GFF1281

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
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137,269 - GFF1279 0.50 +1.8
137,298 + GFF1279 0.52 -0.3
137,315 - GFF1279 0.53 -0.2
137,315 - GFF1279 0.53 +0.2
137,416 + GFF1279 0.59 +0.7
137,416 + GFF1279 0.59 +0.2
137,416 + GFF1279 0.59 +0.5
137,416 + GFF1279 0.59 -0.9
137,416 + GFF1279 0.59 +0.8
137,416 + GFF1279 0.59 +0.4
137,417 - GFF1279 0.59 +0.7
137,417 - GFF1279 0.59 -0.9
137,417 - GFF1279 0.59 +0.8
137,417 - GFF1279 0.59 -0.2
137,417 - GFF1279 0.59 +0.7
137,417 - GFF1279 0.59 -0.6
137,518 + GFF1279 0.65 +0.8
137,875 + GFF1279 0.86 +0.4
137,875 + GFF1279 0.86 +0.2
137,875 + GFF1279 0.86 +0.2
137,875 + GFF1279 0.86 +0.7
137,875 + GFF1279 0.86 +0.6
137,875 + GFF1279 0.86 +1.7
137,875 + GFF1279 0.86 +0.5
137,875 + GFF1279 0.86 +0.2
137,875 + GFF1279 0.86 +0.1
137,876 - GFF1279 0.86 -0.5
137,876 - GFF1279 0.86 -0.0
137,876 - GFF1279 0.86 +1.0
137,876 - GFF1279 0.86 +0.1
137,911 + GFF1279 0.88 +0.6
137,911 + GFF1279 0.88 -1.3
137,912 - GFF1279 0.88 +0.4
137,932 + GFF1279 0.89 +0.5
137,932 + GFF1279 0.89 -0.0
137,932 + GFF1279 0.89 +0.6
137,932 + GFF1279 0.89 +0.3
137,933 - GFF1279 0.89 -0.3
137,933 - GFF1279 0.89 +0.1
137,933 - GFF1279 0.89 +1.6
137,933 - GFF1279 0.89 +0.2
138,120 + -0.7
138,120 + -0.2
138,120 + -0.7
138,121 - +0.1
138,121 - -1.6
138,157 + +0.3
138,525 + GFF1280 0.31 +1.4
138,525 + GFF1280 0.31 +0.5
138,526 - GFF1280 0.31 +0.1
138,540 + GFF1280 0.33 +0.5
138,540 + GFF1280 0.33 +1.0
138,540 + GFF1280 0.33 +0.4
138,540 + GFF1280 0.33 +0.3
138,540 + GFF1280 0.33 +0.4
138,575 + GFF1280 0.35 +0.2
138,609 + GFF1280 0.38 +0.7
138,609 + GFF1280 0.38 +0.9
138,609 + GFF1280 0.38 +0.4
138,609 + GFF1280 0.38 +1.1
138,609 + GFF1280 0.38 +0.4
138,609 + GFF1280 0.38 +0.7
138,609 + GFF1280 0.38 +0.9
138,609 + GFF1280 0.38 -0.3
138,609 + GFF1280 0.38 +0.4
138,609 + GFF1280 0.38 +0.2
138,609 + GFF1280 0.38 +0.4
138,609 + GFF1280 0.38 +0.4
138,609 + GFF1280 0.38 +0.5
138,609 + GFF1280 0.38 +0.7
138,609 + GFF1280 0.38 +0.6
138,610 - GFF1280 0.38 -0.4
138,610 - GFF1280 0.38 +0.5
138,610 - GFF1280 0.38 -0.5
138,610 - GFF1280 0.38 +0.9
138,610 - GFF1280 0.38 +1.2
138,610 - GFF1280 0.38 -0.3
138,610 - GFF1280 0.38 +0.3
138,644 - GFF1280 0.41 +0.4
138,660 + GFF1280 0.42 -0.0
138,660 + GFF1280 0.42 -0.8
138,660 + GFF1280 0.42 +0.5
138,661 - GFF1280 0.42 +0.5
138,813 + GFF1280 0.55 +0.3
138,813 + GFF1280 0.55 +1.7
138,852 + GFF1280 0.58 +1.1
138,852 + GFF1280 0.58 -1.1
138,852 + GFF1280 0.58 +0.1
138,853 - GFF1280 0.58 -0.0
138,853 - GFF1280 0.58 -0.1
138,853 - GFF1280 0.58 +0.1
138,853 - GFF1280 0.58 +0.9
138,853 - GFF1280 0.58 +0.3
138,937 + GFF1280 0.65 +0.7
138,937 + GFF1280 0.65 +0.4
138,938 - GFF1280 0.65 +0.1
138,938 - GFF1280 0.65 +1.1
139,056 + GFF1280 0.75 +1.0
139,056 + GFF1280 0.75 +1.6
139,056 + GFF1280 0.75 -0.6
139,057 - GFF1280 0.75 +0.4
139,221 + GFF1280 0.88 +0.7
139,221 + GFF1280 0.88 +0.0
139,221 + GFF1280 0.88 +0.4
139,221 + GFF1280 0.88 +0.5
139,221 + GFF1280 0.88 +0.7
139,221 + GFF1280 0.88 +1.3
139,221 + GFF1280 0.88 +0.1
139,221 + GFF1280 0.88 -0.1
139,222 - GFF1280 0.89 +0.0
139,222 - GFF1280 0.89 +0.8
139,222 - GFF1280 0.89 -0.0
139,326 + +0.7
139,326 + +0.1
139,326 + +0.5
139,326 + +0.1
139,326 + -0.0
139,326 + +0.9
139,326 + -0.3
139,326 + -0.6
139,327 - +1.1
139,327 - +0.6
139,327 - +0.6
139,327 - -0.1
139,327 - -0.2
139,327 - +2.4
139,327 - +0.6
139,327 - +0.7
139,327 - +0.6
139,327 - +0.4
139,327 - +0.2
139,628 + GFF1281 0.31 -0.1
139,628 + GFF1281 0.31 -0.3
139,629 - GFF1281 0.31 +0.2
139,683 - GFF1281 0.37 +0.5
139,952 + GFF1281 0.68 +1.3
139,952 + GFF1281 0.68 -0.6
139,953 - GFF1281 0.69 +1.1
140,135 + GFF1281 0.90 -1.6
140,135 + GFF1281 0.90 +1.2
140,135 + GFF1281 0.90 +0.7
140,135 + GFF1281 0.90 +0.1
140,135 + GFF1281 0.90 +0.5
140,135 + GFF1281 0.90 +0.9
140,135 + GFF1281 0.90 -0.2
140,135 + GFF1281 0.90 -0.3
140,135 + GFF1281 0.90 -0.5
140,135 + GFF1281 0.90 +0.0
140,135 + GFF1281 0.90 +0.2
140,135 + GFF1281 0.90 +0.0
140,135 + GFF1281 0.90 +0.5
140,135 + GFF1281 0.90 +0.4
140,135 + GFF1281 0.90 +0.9
140,135 + GFF1281 0.90 +0.3
140,136 - GFF1281 0.90 +0.9
140,136 - GFF1281 0.90 -1.1
140,136 - GFF1281 0.90 -0.1
140,136 - GFF1281 0.90 +0.3
140,136 - GFF1281 0.90 -0.3
140,136 - GFF1281 0.90 +0.2
140,136 - GFF1281 0.90 +0.4
140,136 - GFF1281 0.90 -0.5
140,136 - GFF1281 0.90 +0.4
140,136 - GFF1281 0.90 -0.4
140,136 - GFF1281 0.90 +0.2
140,136 - GFF1281 0.90 +0.4
140,136 - GFF1281 0.90 +0.2

Or see this region's nucleotide sequence