Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1203 and GFF1204 are separated by 146 nucleotides GFF1204 and GFF1205 are separated by 175 nucleotides
GFF1203 - Benzoyl-CoA-dihydrodiol lyase (EC 4.1.2.44), at 64,125 to 65,792
GFF1203
GFF1204 - Regulatory protein of benzoate catabolism, at 65,939 to 66,886
GFF1204
GFF1205 - Benzaldehyde dehydrogenase, at 67,062 to 68,639
GFF1205
Position (kb) 65
66
67 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 64.996 kb on + strand, within GFF1203 at 64.996 kb on + strand, within GFF1203 at 64.996 kb on + strand, within GFF1203 at 64.996 kb on + strand, within GFF1203 at 64.996 kb on + strand, within GFF1203 at 64.996 kb on + strand, within GFF1203 at 64.996 kb on + strand, within GFF1203 at 64.997 kb on - strand, within GFF1203 at 64.997 kb on - strand, within GFF1203 at 64.997 kb on - strand, within GFF1203 at 65.002 kb on + strand, within GFF1203 at 65.002 kb on + strand, within GFF1203 at 65.003 kb on - strand, within GFF1203 at 65.003 kb on - strand, within GFF1203 at 65.003 kb on - strand, within GFF1203 at 65.003 kb on - strand, within GFF1203 at 65.417 kb on - strand, within GFF1203 at 65.417 kb on - strand, within GFF1203 at 65.417 kb on - strand, within GFF1203 at 65.632 kb on + strand at 65.633 kb on - strand at 65.633 kb on - strand at 65.633 kb on - strand at 65.633 kb on - strand at 65.633 kb on - strand at 65.633 kb on - strand at 65.633 kb on - strand at 65.633 kb on - strand at 65.633 kb on - strand at 65.633 kb on - strand at 65.654 kb on - strand at 65.737 kb on + strand at 65.737 kb on - strand at 65.738 kb on - strand at 65.759 kb on - strand at 66.015 kb on + strand at 66.015 kb on + strand at 66.015 kb on + strand at 66.015 kb on + strand at 66.016 kb on - strand at 66.016 kb on - strand at 66.016 kb on - strand at 66.051 kb on + strand, within GFF1204 at 66.051 kb on + strand, within GFF1204 at 66.051 kb on + strand, within GFF1204 at 66.052 kb on - strand, within GFF1204 at 66.052 kb on - strand, within GFF1204 at 66.052 kb on - strand, within GFF1204 at 66.052 kb on - strand, within GFF1204 at 66.052 kb on - strand, within GFF1204 at 66.052 kb on - strand, within GFF1204 at 66.052 kb on - strand, within GFF1204 at 66.264 kb on + strand, within GFF1204 at 66.300 kb on + strand, within GFF1204 at 66.325 kb on - strand, within GFF1204 at 66.335 kb on + strand, within GFF1204 at 66.696 kb on + strand, within GFF1204 at 66.964 kb on + strand at 66.991 kb on - strand at 66.991 kb on - strand at 66.999 kb on + strand at 67.000 kb on - strand at 67.000 kb on - strand at 67.000 kb on - strand at 67.000 kb on - strand at 67.000 kb on - strand at 67.000 kb on - strand at 67.251 kb on + strand, within GFF1205 at 67.252 kb on - strand, within GFF1205 at 67.315 kb on - strand, within GFF1205 at 67.317 kb on + strand, within GFF1205 at 67.317 kb on + strand, within GFF1205 at 67.318 kb on - strand, within GFF1205 at 67.318 kb on - strand, within GFF1205 at 67.398 kb on + strand, within GFF1205 at 67.399 kb on + strand, within GFF1205 at 67.399 kb on - strand, within GFF1205 at 67.834 kb on + strand, within GFF1205
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 64,996 + GFF1203 0.52 +0.4 64,996 + GFF1203 0.52 -0.0 64,996 + GFF1203 0.52 -0.0 64,996 + GFF1203 0.52 -0.1 64,996 + GFF1203 0.52 -0.1 64,996 + GFF1203 0.52 +0.2 64,996 + GFF1203 0.52 +0.1 64,997 - GFF1203 0.52 +1.6 64,997 - GFF1203 0.52 +0.0 64,997 - GFF1203 0.52 +2.0 65,002 + GFF1203 0.53 -0.1 65,002 + GFF1203 0.53 +0.0 65,003 - GFF1203 0.53 +2.3 65,003 - GFF1203 0.53 +0.9 65,003 - GFF1203 0.53 +0.1 65,003 - GFF1203 0.53 -0.2 65,417 - GFF1203 0.77 -0.4 65,417 - GFF1203 0.77 +0.8 65,417 - GFF1203 0.77 -0.1 65,632 + +0.3 65,633 - -0.0 65,633 - -0.1 65,633 - +0.2 65,633 - -0.1 65,633 - -0.3 65,633 - -0.5 65,633 - +1.4 65,633 - -1.8 65,633 - +0.7 65,633 - +0.4 65,654 - +0.2 65,737 + -0.0 65,737 - +0.1 65,738 - +0.3 65,759 - +0.6 66,015 + -0.9 66,015 + -2.0 66,015 + -1.9 66,015 + -0.9 66,016 - -1.6 66,016 - -1.5 66,016 - -2.2 66,051 + GFF1204 0.12 +0.1 66,051 + GFF1204 0.12 -1.3 66,051 + GFF1204 0.12 -0.8 66,052 - GFF1204 0.12 -1.2 66,052 - GFF1204 0.12 -0.0 66,052 - GFF1204 0.12 -0.2 66,052 - GFF1204 0.12 -0.6 66,052 - GFF1204 0.12 -0.3 66,052 - GFF1204 0.12 -0.5 66,052 - GFF1204 0.12 -0.5 66,264 + GFF1204 0.34 -4.9 66,300 + GFF1204 0.38 -2.8 66,325 - GFF1204 0.41 -1.2 66,335 + GFF1204 0.42 -1.3 66,696 + GFF1204 0.80 -1.3 66,964 + +0.0 66,991 - -1.0 66,991 - +0.9 66,999 + -0.1 67,000 - +0.8 67,000 - +0.1 67,000 - -1.3 67,000 - +0.3 67,000 - -0.1 67,000 - -0.2 67,251 + GFF1205 0.12 +0.4 67,252 - GFF1205 0.12 +0.6 67,315 - GFF1205 0.16 -0.9 67,317 + GFF1205 0.16 +0.3 67,317 + GFF1205 0.16 -0.6 67,318 - GFF1205 0.16 -0.1 67,318 - GFF1205 0.16 -0.2 67,398 + GFF1205 0.21 +0.2 67,399 + GFF1205 0.21 +1.0 67,399 - GFF1205 0.21 +1.1 67,834 + GFF1205 0.49 +0.7
Or see this region's nucleotide sequence