Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1119

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
48,268	+		GFF1117	0.54	+1.1
48,314	-		GFF1117	0.60	-0.1
48,637	-				+1.2
48,643	+				+0.0
48,753	-				-0.7
48,764	+				-2.3
48,765	-				-0.2
48,775	+				+0.2
48,797	+				-0.6
49,181	+				-0.6
49,182	-				+0.3
49,182	-				+0.4
49,207	+				+0.2
49,227	-				+0.0
49,227	-				+0.1
49,227	-				-0.2
49,268	+				-0.0
49,268	+				-2.7
49,268	+				+1.5
49,269	-				+0.0
49,269	-				+0.1
49,364	+		GFF1119	0.28	+0.4
49,365	-		GFF1119	0.28	+1.0
49,384	-		GFF1119	0.32	+0.4
49,696	-				-0.2
49,696	-				-0.2
50,033	+				+0.1
50,091	-				-0.3
50,192	+				+1.0
50,192	+				+0.4
50,192	+				-0.8
50,192	+				-0.0
50,193	-				+0.2
50,193	-				+0.4
50,193	-				+0.0
50,196	+				+1.7
50,196	+				+1.1
50,196	+				+0.9
50,197	-				-0.3
50,197	-				-0.2
50,197	-				+0.9
50,197	-				-0.1
50,197	-				-0.7
50,197	-				+0.7
50,197	-				+1.1
50,197	-				+0.6
50,298	+				-0.0
50,299	-				-0.1
50,348	+		GFF1120	0.14	-0.6
50,348	+		GFF1120	0.14	-0.3
50,349	-		GFF1120	0.14	+0.2
50,502	+		GFF1120	0.37	-0.0
50,502	+		GFF1120	0.37	+0.2
50,503	-		GFF1120	0.37	-0.2
50,547	+		GFF1120	0.43	+0.5
50,547	+		GFF1120	0.43	-0.2
50,547	+		GFF1120	0.43	-0.1
50,547	+		GFF1120	0.43	-0.2
50,693	+		GFF1120	0.64	+0.4
50,693	+		GFF1120	0.64	-0.7
50,694	-		GFF1120	0.64	+0.5
50,694	-		GFF1120	0.64	-0.6