Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1087

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
1,274	-				-0.1
1,274	-				+0.0
1,274	-				-0.1
1,274	-				-0.3
1,339	+				+1.1
1,340	-				+0.2
1,340	-				-0.3
1,340	-				+0.4
1,340	-				+0.4
1,373	+				+0.7
1,373	+				+0.9
1,374	-				+0.1
1,662	-		GFF1085	0.84	-0.3
1,769	-		GFF1086	0.28	+0.9
1,769	-		GFF1086	0.28	+0.2
1,769	-		GFF1086	0.28	-0.2
1,769	-		GFF1086	0.28	-1.0
1,769	-		GFF1086	0.28	-0.3
1,857	-		GFF1086	0.73	+0.8
1,965	-				-0.1
1,965	-				-0.0
2,053	-				+2.0
2,135	-				-0.9
2,135	-				-0.1
2,185	+				-0.4
2,186	-				+0.0
2,219	+				-0.5
2,219	+				+0.4
2,219	+				+0.1
2,220	-				-1.3
2,220	-				-0.9
2,223	+				+0.4
2,223	+				-0.1
2,223	+				+0.0
2,224	-				-0.6
2,224	-				-0.1
2,224	-				+1.1
2,226	+				+0.4
2,226	+				-0.2
2,226	+				-0.2
2,227	-				+0.3
2,227	-				-0.3
2,227	-				-0.0
2,230	+				-0.0
2,231	-				+0.2
2,231	-				-0.2
2,233	+				-0.6
2,234	-				+0.0
2,234	-				-0.8
2,241	+				-0.3
2,241	+				-0.4
2,241	+				+0.5
2,245	+				-0.3
2,245	+				-0.1
2,245	+				-0.5
2,245	+				-0.5
2,245	+				+0.7
2,245	+				+0.1
2,246	-				+0.7
2,246	-				+0.7
2,246	-				-0.4
2,246	-				+0.2
2,250	+				-0.4
2,250	+				+0.0
2,250	+				-1.2
2,250	+				+1.1
2,250	+				-1.1
2,251	-				-0.3
2,251	-				-0.3
2,253	+				-1.5
2,253	+				-0.7
2,268	+				+0.3
2,268	+				-0.0
2,268	+				+0.5
2,269	-				+0.6
2,293	-				+0.4
2,293	-				-1.9
2,293	-				+0.0
2,293	-				-0.4
2,293	-				+0.3
2,293	-				-0.0
2,321	+				-0.6
2,321	+				+0.1
2,321	+				+0.2
2,406	+		GFF1087	0.12	-0.6
2,406	+		GFF1087	0.12	+0.8
2,406	+		GFF1087	0.12	+0.1
2,419	+		GFF1087	0.13	-0.6
2,419	+		GFF1087	0.13	+0.1
2,419	+		GFF1087	0.13	-0.1
2,419	+		GFF1087	0.13	+0.3
2,419	+		GFF1087	0.13	-0.2
2,419	+		GFF1087	0.13	+0.3
2,419	+		GFF1087	0.13	+0.5
2,419	+		GFF1087	0.13	-0.1
2,420	-		GFF1087	0.13	+0.1
2,420	-		GFF1087	0.13	+0.7
2,420	-		GFF1087	0.13	-0.4
2,420	-		GFF1087	0.13	-0.7
2,585	+		GFF1087	0.28	+0.3
2,585	+		GFF1087	0.28	+1.1
2,585	+		GFF1087	0.28	-2.7
2,585	+		GFF1087	0.28	-0.0
2,585	+		GFF1087	0.28	+0.3
2,585	+		GFF1087	0.28	+0.4
2,586	-		GFF1087	0.28	+0.3
2,586	-		GFF1087	0.28	-0.8
2,586	-		GFF1087	0.28	+1.0
3,372	+				-0.1
3,372	+				-0.0
3,372	+				-0.3
3,372	+				+0.7
3,372	+				-0.1
3,372	+				-0.1
3,372	+				+0.4
3,372	+				-0.1
3,373	-				-0.6
3,373	-				-4.3
3,373	-				-0.5
3,373	-				+0.1
3,373	-				+0.4
3,373	-				-0.7
3,373	-				+0.7
3,373	-				-0.2
3,373	-				+0.1
3,373	-				-0.2
3,373	-				-0.2
3,373	-				-0.0
3,373	-				+0.4
3,373	-				+0.0
3,396	+				+1.0
3,396	+				+0.1
3,396	+				+0.2
3,396	+				+0.1
3,396	+				+1.1
3,397	-				-0.2
3,544	+				-0.3
3,544	+				-1.0
3,544	+				+1.1
3,558	-				-0.6
3,620	-				-0.3
3,628	+				-0.2
3,665	+				-0.2
3,665	+				+0.0
3,665	+				+0.9
3,665	+				-0.3
3,712	-				+0.2
3,716	+				+1.2
3,716	+				+0.7
3,716	+				+0.2
3,716	+				-0.1
3,716	+				+1.0
3,716	+				+0.5
3,716	+				+1.1
3,717	-				+0.1
3,717	-				+0.4
3,717	-				+0.7
3,717	-				+0.4
3,717	-				-0.3
3,717	-				+0.4
3,717	-				-0.2
3,860	+		GFF1088	0.35	+1.2
3,861	-		GFF1088	0.36	+0.1
3,939	+		GFF1088	0.60	-0.3
3,944	+		GFF1088	0.62	-0.1
3,944	+		GFF1088	0.62	+0.6
3,945	-		GFF1088	0.62	+0.6
3,945	-		GFF1088	0.62	-0.5
4,039	+				+0.2
4,053	-				+1.1
4,214	+		GFF1089	0.52	+0.2
4,214	+		GFF1089	0.52	+0.8
4,214	+		GFF1089	0.52	-0.7
4,214	+		GFF1089	0.52	-0.3
4,214	+		GFF1089	0.52	+0.0
4,214	+		GFF1089	0.52	+0.2
4,214	+		GFF1089	0.52	-0.9
4,215	-		GFF1089	0.52	+0.5
4,215	-		GFF1089	0.52	+0.3
4,313	+		GFF1089	0.88	+0.4
4,314	-		GFF1089	0.89	+0.0
4,314	-		GFF1089	0.89	-0.1
4,314	-		GFF1089	0.89	+0.5