Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF991 and GFF992 are separated by 24 nucleotides GFF992 and GFF993 are separated by 13 nucleotides GFF993 and GFF994 overlap by 4 nucleotides GFF994 and GFF995 are separated by 14 nucleotides
GFF991 - hypothetical protein, at 730,796 to 731,230
GFF991
GFF992 - Citronellol and citronellal dehydrogenase, at 731,255 to 732,136
GFF992
GFF993 - Transglutaminase-like domain, at 732,150 to 732,845
GFF993
GFF994 - probable hydrolase, at 732,842 to 733,708
GFF994
GFF995 - AMP-dependent synthetase/ligase in alkane synthesis cluster, at 733,723 to 735,237
GFF995
Position (kb) 732
733 Strain fitness (log2 ratio) -1
0
1 at 731.266 kb on + strand at 731.266 kb on + strand at 731.267 kb on - strand at 731.374 kb on - strand, within GFF992 at 731.866 kb on + strand, within GFF992 at 731.866 kb on - strand, within GFF992 at 731.870 kb on + strand, within GFF992 at 731.871 kb on - strand, within GFF992 at 731.871 kb on - strand, within GFF992 at 731.871 kb on - strand, within GFF992 at 732.149 kb on + strand at 732.297 kb on + strand, within GFF993 at 732.300 kb on + strand, within GFF993 at 732.325 kb on - strand, within GFF993 at 732.513 kb on + strand, within GFF993 at 732.699 kb on + strand, within GFF993 at 732.699 kb on + strand, within GFF993 at 732.700 kb on - strand, within GFF993 at 732.700 kb on - strand, within GFF993 at 732.700 kb on - strand, within GFF993 at 732.700 kb on - strand, within GFF993 at 732.700 kb on - strand, within GFF993 at 733.232 kb on + strand, within GFF994 at 733.315 kb on + strand, within GFF994 at 733.316 kb on - strand, within GFF994 at 733.317 kb on - strand, within GFF994 at 733.777 kb on + strand at 733.778 kb on - strand at 733.831 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 731,266 + -0.3 731,266 + +0.0 731,267 - +1.2 731,374 - GFF992 0.13 -0.2 731,866 + GFF992 0.69 +0.7 731,866 - GFF992 0.69 +0.4 731,870 + GFF992 0.70 +0.4 731,871 - GFF992 0.70 -0.4 731,871 - GFF992 0.70 -0.9 731,871 - GFF992 0.70 +0.0 732,149 + -0.4 732,297 + GFF993 0.21 +0.2 732,300 + GFF993 0.22 +0.8 732,325 - GFF993 0.25 +0.2 732,513 + GFF993 0.52 -0.2 732,699 + GFF993 0.79 +0.5 732,699 + GFF993 0.79 -1.1 732,700 - GFF993 0.79 +0.8 732,700 - GFF993 0.79 -0.2 732,700 - GFF993 0.79 +0.3 732,700 - GFF993 0.79 -0.1 732,700 - GFF993 0.79 +0.2 733,232 + GFF994 0.45 +0.5 733,315 + GFF994 0.55 -1.6 733,316 - GFF994 0.55 -1.3 733,317 - GFF994 0.55 -0.1 733,777 + +0.5 733,778 - -0.3 733,831 + +0.2
Or see this region's nucleotide sequence