Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF974

Experiment: Ying_OrganicAcid7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF972 and GFF973 are separated by 61 nucleotidesGFF973 and GFF974 overlap by 4 nucleotidesGFF974 and GFF975 overlap by 4 nucleotides GFF972 - Thiolase precursor, at 708,945 to 710,102 GFF972 GFF973 - hypothetical protein, at 710,164 to 710,571 GFF973 GFF974 - Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13), at 710,568 to 711,737 GFF974 GFF975 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 711,734 to 712,900 GFF975 Position (kb) 710 711 712Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 709.636 kb on + strand, within GFF972at 709.670 kb on - strand, within GFF972at 709.697 kb on - strand, within GFF972at 709.697 kb on - strand, within GFF972at 709.708 kb on + strand, within GFF972at 709.708 kb on + strand, within GFF972at 709.709 kb on - strand, within GFF972at 709.709 kb on - strand, within GFF972at 709.709 kb on - strand, within GFF972at 709.837 kb on + strand, within GFF972at 709.837 kb on + strand, within GFF972at 709.837 kb on + strand, within GFF972at 709.837 kb on + strand, within GFF972at 709.837 kb on + strand, within GFF972at 709.838 kb on - strand, within GFF972at 709.838 kb on - strand, within GFF972at 709.838 kb on - strand, within GFF972at 709.891 kb on + strand, within GFF972at 709.924 kb on + strand, within GFF972at 709.924 kb on + strand, within GFF972at 709.925 kb on - strand, within GFF972at 710.330 kb on + strand, within GFF973at 710.632 kb on + strandat 710.632 kb on + strandat 710.633 kb on - strandat 710.633 kb on - strandat 710.656 kb on + strandat 710.656 kb on + strandat 710.656 kb on + strandat 710.656 kb on + strandat 710.657 kb on - strandat 710.657 kb on - strandat 710.761 kb on + strand, within GFF974at 710.845 kb on + strand, within GFF974at 710.846 kb on - strand, within GFF974at 710.960 kb on - strand, within GFF974at 710.960 kb on - strand, within GFF974at 711.035 kb on + strand, within GFF974at 711.035 kb on + strand, within GFF974at 711.273 kb on - strand, within GFF974at 711.273 kb on - strand, within GFF974at 711.388 kb on + strand, within GFF974at 711.388 kb on + strand, within GFF974at 711.388 kb on + strand, within GFF974at 711.388 kb on + strand, within GFF974at 711.388 kb on + strand, within GFF974at 711.389 kb on - strand, within GFF974at 711.389 kb on - strand, within GFF974at 711.391 kb on + strand, within GFF974at 711.391 kb on + strand, within GFF974at 711.391 kb on + strand, within GFF974at 711.535 kb on + strand, within GFF974at 711.586 kb on + strand, within GFF974at 711.587 kb on - strand, within GFF974at 711.777 kb on + strandat 711.840 kb on + strandat 711.841 kb on - strandat 711.856 kb on - strand, within GFF975at 711.856 kb on - strand, within GFF975at 711.989 kb on + strand, within GFF975at 711.989 kb on + strand, within GFF975at 711.989 kb on + strand, within GFF975at 711.989 kb on + strand, within GFF975at 711.990 kb on - strand, within GFF975at 711.990 kb on - strand, within GFF975at 712.117 kb on - strand, within GFF975at 712.117 kb on - strand, within GFF975at 712.191 kb on + strand, within GFF975at 712.284 kb on + strand, within GFF975at 712.285 kb on - strand, within GFF975at 712.285 kb on - strand, within GFF975at 712.386 kb on + strand, within GFF975at 712.386 kb on + strand, within GFF975at 712.387 kb on - strand, within GFF975at 712.412 kb on + strand, within GFF975at 712.412 kb on + strand, within GFF975at 712.412 kb on + strand, within GFF975at 712.412 kb on + strand, within GFF975at 712.412 kb on + strand, within GFF975at 712.413 kb on - strand, within GFF975at 712.413 kb on - strand, within GFF975at 712.413 kb on - strand, within GFF975at 712.413 kb on - strand, within GFF975at 712.413 kb on - strand, within GFF975at 712.426 kb on - strand, within GFF975at 712.426 kb on - strand, within GFF975at 712.426 kb on - strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.434 kb on - strand, within GFF975at 712.434 kb on - strand, within GFF975at 712.434 kb on - strand, within GFF975at 712.502 kb on + strand, within GFF975at 712.503 kb on - strand, within GFF975at 712.530 kb on - strand, within GFF975at 712.571 kb on + strand, within GFF975at 712.572 kb on - strand, within GFF975at 712.572 kb on - strand, within GFF975

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3
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709,636 + GFF972 0.60 -0.6
709,670 - GFF972 0.63 -0.5
709,697 - GFF972 0.65 -0.3
709,697 - GFF972 0.65 -0.2
709,708 + GFF972 0.66 +0.1
709,708 + GFF972 0.66 +0.0
709,709 - GFF972 0.66 +0.2
709,709 - GFF972 0.66 +0.5
709,709 - GFF972 0.66 -1.1
709,837 + GFF972 0.77 -0.6
709,837 + GFF972 0.77 +1.2
709,837 + GFF972 0.77 -0.4
709,837 + GFF972 0.77 +0.0
709,837 + GFF972 0.77 -0.4
709,838 - GFF972 0.77 +0.4
709,838 - GFF972 0.77 +0.6
709,838 - GFF972 0.77 +0.6
709,891 + GFF972 0.82 -0.8
709,924 + GFF972 0.85 -0.8
709,924 + GFF972 0.85 -0.4
709,925 - GFF972 0.85 +0.7
710,330 + GFF973 0.41 +0.3
710,632 + +0.1
710,632 + +0.2
710,633 - -0.3
710,633 - -0.1
710,656 + -1.2
710,656 + +0.2
710,656 + +0.5
710,656 + -0.3
710,657 - +0.5
710,657 - -0.7
710,761 + GFF974 0.16 +0.4
710,845 + GFF974 0.24 +0.9
710,846 - GFF974 0.24 -0.1
710,960 - GFF974 0.34 +0.7
710,960 - GFF974 0.34 -0.2
711,035 + GFF974 0.40 -0.3
711,035 + GFF974 0.40 +1.6
711,273 - GFF974 0.60 -0.2
711,273 - GFF974 0.60 +0.0
711,388 + GFF974 0.70 +0.2
711,388 + GFF974 0.70 -1.1
711,388 + GFF974 0.70 -0.1
711,388 + GFF974 0.70 -0.8
711,388 + GFF974 0.70 -0.8
711,389 - GFF974 0.70 +0.7
711,389 - GFF974 0.70 +1.2
711,391 + GFF974 0.70 -0.3
711,391 + GFF974 0.70 +0.1
711,391 + GFF974 0.70 -0.3
711,535 + GFF974 0.83 +6.7
711,586 + GFF974 0.87 +1.0
711,587 - GFF974 0.87 +0.2
711,777 + -0.1
711,840 + -0.3
711,841 - +0.6
711,856 - GFF975 0.10 -0.3
711,856 - GFF975 0.10 +0.6
711,989 + GFF975 0.22 -1.6
711,989 + GFF975 0.22 -0.2
711,989 + GFF975 0.22 +0.4
711,989 + GFF975 0.22 +0.7
711,990 - GFF975 0.22 -0.2
711,990 - GFF975 0.22 +0.5
712,117 - GFF975 0.33 -0.0
712,117 - GFF975 0.33 +0.1
712,191 + GFF975 0.39 +0.2
712,284 + GFF975 0.47 +1.4
712,285 - GFF975 0.47 +0.8
712,285 - GFF975 0.47 +0.7
712,386 + GFF975 0.56 +0.8
712,386 + GFF975 0.56 -0.6
712,387 - GFF975 0.56 -0.6
712,412 + GFF975 0.58 +0.1
712,412 + GFF975 0.58 -0.6
712,412 + GFF975 0.58 +0.2
712,412 + GFF975 0.58 -0.4
712,412 + GFF975 0.58 -0.5
712,413 - GFF975 0.58 -0.6
712,413 - GFF975 0.58 -0.5
712,413 - GFF975 0.58 +0.4
712,413 - GFF975 0.58 +0.2
712,413 - GFF975 0.58 -0.3
712,426 - GFF975 0.59 +0.0
712,426 - GFF975 0.59 +0.2
712,426 - GFF975 0.59 +0.0
712,433 + GFF975 0.60 -0.8
712,433 + GFF975 0.60 -0.2
712,433 + GFF975 0.60 +0.3
712,433 + GFF975 0.60 +0.8
712,433 + GFF975 0.60 -0.3
712,433 + GFF975 0.60 +0.8
712,433 + GFF975 0.60 -1.3
712,434 - GFF975 0.60 +1.4
712,434 - GFF975 0.60 -0.5
712,434 - GFF975 0.60 -1.5
712,502 + GFF975 0.66 +1.6
712,503 - GFF975 0.66 -0.4
712,530 - GFF975 0.68 +0.1
712,571 + GFF975 0.72 -0.3
712,572 - GFF975 0.72 +0.8
712,572 - GFF975 0.72 -0.2

Or see this region's nucleotide sequence