Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF746 and GFF747 are separated by 7 nucleotides GFF747 and GFF748 are separated by 25 nucleotides GFF748 and GFF749 are separated by 24 nucleotides
GFF746 - Spermidine synthase (EC 2.5.1.16), at 431,993 to 432,775
GFF746
GFF747 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 432,783 to 434,597
GFF747
GFF748 - Tricarboxylate transport protein TctB, at 434,623 to 435,129
GFF748
GFF749 - Tricarboxylate transport membrane protein TctA, at 435,154 to 436,716
GFF749
Position (kb) 432
433
434
435 Strain fitness (log2 ratio) -1
0
1 at 431.798 kb on + strand at 431.798 kb on + strand at 431.899 kb on + strand at 431.908 kb on + strand at 431.909 kb on - strand at 432.155 kb on + strand, within GFF746 at 432.155 kb on + strand, within GFF746 at 432.156 kb on - strand, within GFF746 at 432.156 kb on - strand, within GFF746 at 432.446 kb on + strand, within GFF746 at 432.564 kb on - strand, within GFF746 at 432.769 kb on - strand at 433.047 kb on + strand, within GFF747 at 433.047 kb on + strand, within GFF747 at 433.047 kb on + strand, within GFF747 at 433.048 kb on - strand, within GFF747 at 433.110 kb on + strand, within GFF747 at 433.437 kb on + strand, within GFF747 at 433.438 kb on - strand, within GFF747 at 433.438 kb on - strand, within GFF747 at 433.534 kb on - strand, within GFF747 at 433.881 kb on + strand, within GFF747 at 434.190 kb on + strand, within GFF747 at 434.343 kb on + strand, within GFF747 at 434.352 kb on + strand, within GFF747 at 434.413 kb on - strand, within GFF747 at 434.740 kb on + strand, within GFF748 at 435.362 kb on - strand, within GFF749 at 435.362 kb on - strand, within GFF749 at 435.362 kb on - strand, within GFF749 at 435.365 kb on - strand, within GFF749 at 435.376 kb on + strand, within GFF749 at 435.377 kb on - strand, within GFF749
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 431,798 + -0.2 431,798 + +0.4 431,899 + -0.9 431,908 + +0.1 431,909 - -0.0 432,155 + GFF746 0.21 +0.5 432,155 + GFF746 0.21 +0.0 432,156 - GFF746 0.21 +0.1 432,156 - GFF746 0.21 -0.6 432,446 + GFF746 0.58 -0.6 432,564 - GFF746 0.73 +0.1 432,769 - -0.2 433,047 + GFF747 0.15 -0.0 433,047 + GFF747 0.15 -0.7 433,047 + GFF747 0.15 -1.0 433,048 - GFF747 0.15 +0.1 433,110 + GFF747 0.18 +1.0 433,437 + GFF747 0.36 +0.9 433,438 - GFF747 0.36 +0.4 433,438 - GFF747 0.36 +0.4 433,534 - GFF747 0.41 +0.2 433,881 + GFF747 0.60 +0.8 434,190 + GFF747 0.78 -0.6 434,343 + GFF747 0.86 +0.3 434,352 + GFF747 0.86 +0.4 434,413 - GFF747 0.90 +0.7 434,740 + GFF748 0.23 +0.1 435,362 - GFF749 0.13 -0.0 435,362 - GFF749 0.13 -0.8 435,362 - GFF749 0.13 -0.1 435,365 - GFF749 0.13 -0.3 435,376 + GFF749 0.14 +1.0 435,377 - GFF749 0.14 +0.3
Or see this region's nucleotide sequence