Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF697 and GFF698 overlap by 4 nucleotides GFF698 and GFF699 are separated by 10 nucleotides GFF699 and GFF700 are separated by 89 nucleotides
GFF697 - Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA, at 376,139 to 377,302
GFF697
GFF698 - Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB, at 377,299 to 378,204
GFF698
GFF699 - Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone, at 378,215 to 378,811
GFF699
GFF700 - Two-component system response regulator QseB, at 378,901 to 379,560
GFF700
Position (kb) 377
378
379 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 376.594 kb on - strand, within GFF697 at 376.594 kb on - strand, within GFF697 at 376.721 kb on + strand, within GFF697 at 376.847 kb on + strand, within GFF697 at 376.847 kb on + strand, within GFF697 at 376.847 kb on + strand, within GFF697 at 376.848 kb on - strand, within GFF697 at 376.848 kb on - strand, within GFF697 at 376.848 kb on - strand, within GFF697 at 376.997 kb on + strand, within GFF697 at 376.997 kb on + strand, within GFF697 at 376.998 kb on - strand, within GFF697 at 377.018 kb on + strand, within GFF697 at 377.018 kb on + strand, within GFF697 at 377.019 kb on - strand, within GFF697 at 377.654 kb on - strand, within GFF698 at 377.707 kb on + strand, within GFF698 at 377.708 kb on - strand, within GFF698 at 377.719 kb on + strand, within GFF698 at 377.720 kb on - strand, within GFF698 at 377.896 kb on + strand, within GFF698 at 377.912 kb on - strand, within GFF698 at 377.984 kb on - strand, within GFF698 at 378.088 kb on + strand, within GFF698 at 378.196 kb on + strand at 378.196 kb on + strand at 378.196 kb on + strand at 378.196 kb on + strand at 378.196 kb on + strand at 378.197 kb on - strand at 378.330 kb on - strand, within GFF699 at 378.564 kb on - strand, within GFF699 at 378.638 kb on + strand, within GFF699 at 378.647 kb on + strand, within GFF699 at 378.648 kb on - strand, within GFF699 at 378.648 kb on - strand, within GFF699 at 378.648 kb on - strand, within GFF699 at 378.710 kb on + strand, within GFF699 at 378.711 kb on - strand, within GFF699 at 378.716 kb on + strand, within GFF699 at 378.716 kb on + strand, within GFF699 at 378.743 kb on + strand, within GFF699 at 378.820 kb on + strand at 378.820 kb on + strand at 378.973 kb on + strand, within GFF700 at 378.973 kb on + strand, within GFF700 at 378.973 kb on + strand, within GFF700 at 378.974 kb on - strand, within GFF700 at 379.033 kb on + strand, within GFF700 at 379.033 kb on + strand, within GFF700 at 379.033 kb on + strand, within GFF700 at 379.034 kb on - strand, within GFF700 at 379.192 kb on + strand, within GFF700 at 379.192 kb on + strand, within GFF700 at 379.192 kb on + strand, within GFF700 at 379.192 kb on + strand, within GFF700 at 379.192 kb on + strand, within GFF700 at 379.193 kb on - strand, within GFF700 at 379.193 kb on - strand, within GFF700 at 379.193 kb on - strand, within GFF700 at 379.193 kb on - strand, within GFF700 at 379.193 kb on - strand, within GFF700 at 379.193 kb on - strand, within GFF700 at 379.193 kb on - strand, within GFF700
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 376,594 - GFF697 0.39 -2.4 376,594 - GFF697 0.39 -3.2 376,721 + GFF697 0.50 -3.3 376,847 + GFF697 0.61 -2.7 376,847 + GFF697 0.61 -1.7 376,847 + GFF697 0.61 -3.0 376,848 - GFF697 0.61 +0.7 376,848 - GFF697 0.61 -0.7 376,848 - GFF697 0.61 -1.7 376,997 + GFF697 0.74 -1.0 376,997 + GFF697 0.74 -3.3 376,998 - GFF697 0.74 +0.3 377,018 + GFF697 0.76 -1.8 377,018 + GFF697 0.76 -0.8 377,019 - GFF697 0.76 -0.9 377,654 - GFF698 0.39 -1.8 377,707 + GFF698 0.45 -1.0 377,708 - GFF698 0.45 -1.0 377,719 + GFF698 0.46 +0.3 377,720 - GFF698 0.46 -0.7 377,896 + GFF698 0.66 -2.0 377,912 - GFF698 0.68 -1.6 377,984 - GFF698 0.76 -1.9 378,088 + GFF698 0.87 -1.8 378,196 + -0.1 378,196 + -2.3 378,196 + -1.2 378,196 + +0.3 378,196 + -0.8 378,197 - -0.3 378,330 - GFF699 0.19 +0.1 378,564 - GFF699 0.58 -0.1 378,638 + GFF699 0.71 -0.1 378,647 + GFF699 0.72 -0.1 378,648 - GFF699 0.73 +0.7 378,648 - GFF699 0.73 +1.3 378,648 - GFF699 0.73 -0.5 378,710 + GFF699 0.83 +0.3 378,711 - GFF699 0.83 -0.7 378,716 + GFF699 0.84 +0.1 378,716 + GFF699 0.84 -0.1 378,743 + GFF699 0.88 +0.5 378,820 + +0.5 378,820 + +0.1 378,973 + GFF700 0.11 -0.1 378,973 + GFF700 0.11 +0.7 378,973 + GFF700 0.11 +0.6 378,974 - GFF700 0.11 -1.0 379,033 + GFF700 0.20 +0.4 379,033 + GFF700 0.20 -1.0 379,033 + GFF700 0.20 -0.1 379,034 - GFF700 0.20 -0.1 379,192 + GFF700 0.44 +0.4 379,192 + GFF700 0.44 -0.3 379,192 + GFF700 0.44 +0.3 379,192 + GFF700 0.44 -0.4 379,192 + GFF700 0.44 -1.0 379,193 - GFF700 0.44 +0.2 379,193 - GFF700 0.44 +0.1 379,193 - GFF700 0.44 -0.4 379,193 - GFF700 0.44 +0.7 379,193 - GFF700 0.44 -1.0 379,193 - GFF700 0.44 +0.4 379,193 - GFF700 0.44 +0.3
Or see this region's nucleotide sequence