Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF608

Experiment: Ying_OrganicAcid7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF607 and GFF608 are separated by 51 nucleotidesGFF608 and GFF609 overlap by 4 nucleotides GFF607 - Organophosphate pesticide hydrolase, at 281,800 to 282,753 GFF607 GFF608 - Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-), at 282,805 to 284,769 GFF608 GFF609 - Glucans biosynthesis protein G precursor, at 284,766 to 286,337 GFF609 Position (kb) 282 283 284 285Strain fitness (log2 ratio) -2 -1 0 1at 281.905 kb on + strand, within GFF607at 281.906 kb on - strand, within GFF607at 281.906 kb on - strand, within GFF607at 282.064 kb on + strand, within GFF607at 282.065 kb on - strand, within GFF607at 282.382 kb on + strand, within GFF607at 282.382 kb on + strand, within GFF607at 282.382 kb on + strand, within GFF607at 282.383 kb on - strand, within GFF607at 282.383 kb on - strand, within GFF607at 282.383 kb on - strand, within GFF607at 282.484 kb on + strand, within GFF607at 282.485 kb on + strand, within GFF607at 282.485 kb on - strand, within GFF607at 282.485 kb on - strand, within GFF607at 282.485 kb on - strand, within GFF607at 282.625 kb on + strand, within GFF607at 282.625 kb on + strand, within GFF607at 282.626 kb on - strand, within GFF607at 282.737 kb on - strandat 283.445 kb on + strand, within GFF608at 283.446 kb on - strand, within GFF608at 283.446 kb on - strand, within GFF608at 283.446 kb on - strand, within GFF608at 283.589 kb on + strand, within GFF608at 283.589 kb on + strand, within GFF608at 283.589 kb on + strand, within GFF608at 283.590 kb on - strand, within GFF608at 283.590 kb on - strand, within GFF608at 283.766 kb on + strand, within GFF608at 283.767 kb on - strand, within GFF608at 283.767 kb on - strand, within GFF608at 283.767 kb on - strand, within GFF608at 283.767 kb on - strand, within GFF608at 283.985 kb on + strand, within GFF608at 283.985 kb on + strand, within GFF608at 283.985 kb on + strand, within GFF608at 283.985 kb on + strand, within GFF608at 283.985 kb on + strand, within GFF608at 283.985 kb on + strand, within GFF608at 283.985 kb on + strand, within GFF608at 283.985 kb on + strand, within GFF608at 283.985 kb on + strand, within GFF608at 283.985 kb on + strand, within GFF608at 283.986 kb on - strand, within GFF608at 283.986 kb on - strand, within GFF608at 283.986 kb on - strand, within GFF608at 283.986 kb on - strand, within GFF608at 283.986 kb on - strand, within GFF608at 283.986 kb on - strand, within GFF608at 283.991 kb on + strand, within GFF608at 284.067 kb on - strand, within GFF608at 284.067 kb on - strand, within GFF608at 284.069 kb on + strand, within GFF608at 284.069 kb on + strand, within GFF608at 284.069 kb on + strand, within GFF608at 284.069 kb on + strand, within GFF608at 284.070 kb on - strand, within GFF608at 284.070 kb on - strand, within GFF608at 284.070 kb on - strand, within GFF608at 284.070 kb on - strand, within GFF608at 284.070 kb on - strand, within GFF608at 284.070 kb on - strand, within GFF608at 284.070 kb on - strand, within GFF608at 284.162 kb on + strand, within GFF608at 284.162 kb on + strand, within GFF608at 284.163 kb on - strand, within GFF608at 284.163 kb on - strand, within GFF608at 284.163 kb on - strand, within GFF608at 284.163 kb on - strand, within GFF608at 284.163 kb on - strand, within GFF608at 284.163 kb on - strand, within GFF608at 284.163 kb on - strand, within GFF608at 284.445 kb on - strand, within GFF608at 284.445 kb on - strand, within GFF608at 284.445 kb on - strand, within GFF608at 284.445 kb on - strand, within GFF608at 284.911 kb on + strandat 284.912 kb on - strandat 284.912 kb on - strandat 285.019 kb on + strand, within GFF609at 285.019 kb on + strand, within GFF609at 285.020 kb on - strand, within GFF609at 285.020 kb on - strand, within GFF609at 285.139 kb on + strand, within GFF609at 285.139 kb on + strand, within GFF609at 285.139 kb on + strand, within GFF609at 285.139 kb on + strand, within GFF609at 285.301 kb on + strand, within GFF609at 285.322 kb on + strand, within GFF609at 285.322 kb on + strand, within GFF609at 285.322 kb on + strand, within GFF609at 285.322 kb on + strand, within GFF609at 285.322 kb on + strand, within GFF609at 285.322 kb on + strand, within GFF609at 285.322 kb on + strand, within GFF609at 285.323 kb on - strand, within GFF609at 285.323 kb on - strand, within GFF609at 285.323 kb on - strand, within GFF609at 285.323 kb on - strand, within GFF609

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3
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281,905 + GFF607 0.11 -0.0
281,906 - GFF607 0.11 +0.0
281,906 - GFF607 0.11 -0.4
282,064 + GFF607 0.28 +0.7
282,065 - GFF607 0.28 +0.2
282,382 + GFF607 0.61 +0.3
282,382 + GFF607 0.61 -0.1
282,382 + GFF607 0.61 +0.4
282,383 - GFF607 0.61 -0.0
282,383 - GFF607 0.61 -0.0
282,383 - GFF607 0.61 -1.0
282,484 + GFF607 0.72 +0.4
282,485 + GFF607 0.72 +0.1
282,485 - GFF607 0.72 -0.7
282,485 - GFF607 0.72 -0.3
282,485 - GFF607 0.72 +0.4
282,625 + GFF607 0.86 +0.3
282,625 + GFF607 0.86 -0.3
282,626 - GFF607 0.87 +0.3
282,737 - +0.3
283,445 + GFF608 0.33 +0.6
283,446 - GFF608 0.33 +0.1
283,446 - GFF608 0.33 +0.3
283,446 - GFF608 0.33 -0.2
283,589 + GFF608 0.40 +0.3
283,589 + GFF608 0.40 -0.2
283,589 + GFF608 0.40 -0.1
283,590 - GFF608 0.40 +1.3
283,590 - GFF608 0.40 +0.2
283,766 + GFF608 0.49 -0.1
283,767 - GFF608 0.49 +1.1
283,767 - GFF608 0.49 +0.3
283,767 - GFF608 0.49 +0.2
283,767 - GFF608 0.49 -0.8
283,985 + GFF608 0.60 -0.2
283,985 + GFF608 0.60 +1.3
283,985 + GFF608 0.60 +0.1
283,985 + GFF608 0.60 -0.4
283,985 + GFF608 0.60 +0.5
283,985 + GFF608 0.60 +0.1
283,985 + GFF608 0.60 +0.2
283,985 + GFF608 0.60 -0.5
283,985 + GFF608 0.60 -0.3
283,985 + GFF608 0.60 -0.2
283,986 - GFF608 0.60 -0.5
283,986 - GFF608 0.60 +1.3
283,986 - GFF608 0.60 +0.1
283,986 - GFF608 0.60 -1.7
283,986 - GFF608 0.60 +0.3
283,986 - GFF608 0.60 +0.5
283,991 + GFF608 0.60 +1.3
284,067 - GFF608 0.64 +0.0
284,067 - GFF608 0.64 -0.5
284,069 + GFF608 0.64 -0.3
284,069 + GFF608 0.64 +0.3
284,069 + GFF608 0.64 +0.3
284,069 + GFF608 0.64 +0.2
284,070 - GFF608 0.64 -0.4
284,070 - GFF608 0.64 +0.3
284,070 - GFF608 0.64 +0.0
284,070 - GFF608 0.64 +0.0
284,070 - GFF608 0.64 +0.9
284,070 - GFF608 0.64 -0.6
284,070 - GFF608 0.64 -1.3
284,162 + GFF608 0.69 +0.7
284,162 + GFF608 0.69 -0.7
284,163 - GFF608 0.69 -0.0
284,163 - GFF608 0.69 -1.7
284,163 - GFF608 0.69 -2.0
284,163 - GFF608 0.69 +0.7
284,163 - GFF608 0.69 +0.0
284,163 - GFF608 0.69 +0.0
284,163 - GFF608 0.69 -0.1
284,445 - GFF608 0.83 -0.1
284,445 - GFF608 0.83 +1.1
284,445 - GFF608 0.83 +0.8
284,445 - GFF608 0.83 +0.4
284,911 + -0.2
284,912 - -0.2
284,912 - -0.4
285,019 + GFF609 0.16 +0.3
285,019 + GFF609 0.16 +0.1
285,020 - GFF609 0.16 -0.9
285,020 - GFF609 0.16 -0.7
285,139 + GFF609 0.24 +0.2
285,139 + GFF609 0.24 +0.4
285,139 + GFF609 0.24 +0.1
285,139 + GFF609 0.24 +0.2
285,301 + GFF609 0.34 -0.3
285,322 + GFF609 0.35 +0.3
285,322 + GFF609 0.35 +0.7
285,322 + GFF609 0.35 -1.3
285,322 + GFF609 0.35 -0.4
285,322 + GFF609 0.35 +0.3
285,322 + GFF609 0.35 -0.8
285,322 + GFF609 0.35 -0.1
285,323 - GFF609 0.35 -0.3
285,323 - GFF609 0.35 +0.3
285,323 - GFF609 0.35 +0.6
285,323 - GFF609 0.35 -1.0

Or see this region's nucleotide sequence