Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF601 and GFF602 are separated by 91 nucleotides GFF602 and GFF603 overlap by 4 nucleotides GFF603 and GFF604 are separated by 42 nucleotides GFF604 and GFF605 are separated by 8 nucleotides
GFF601 - Transcriptional regulator, IclR family, at 275,491 to 276,252
GFF601
GFF602 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 276,344 to 277,159
GFF602
GFF603 - Monooxygenase, flavin-binding family, at 277,156 to 278,469
GFF603
GFF604 - Na(+) dependent transporter,Sodium Bile acid symporter family, at 278,512 to 279,438
GFF604
GFF605 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 279,447 to 280,445
GFF605
Position (kb) 277
278
279 Strain fitness (log2 ratio) -1
0
1
2 at 276.309 kb on + strand at 276.806 kb on + strand, within GFF602 at 276.836 kb on + strand, within GFF602 at 276.836 kb on + strand, within GFF602 at 276.902 kb on + strand, within GFF602 at 276.903 kb on - strand, within GFF602 at 277.318 kb on + strand, within GFF603 at 277.318 kb on + strand, within GFF603 at 277.423 kb on + strand, within GFF603 at 277.424 kb on - strand, within GFF603 at 277.424 kb on - strand, within GFF603 at 277.466 kb on - strand, within GFF603 at 277.573 kb on + strand, within GFF603 at 277.573 kb on + strand, within GFF603 at 277.670 kb on - strand, within GFF603 at 277.795 kb on + strand, within GFF603 at 277.798 kb on + strand, within GFF603 at 277.798 kb on + strand, within GFF603 at 277.813 kb on + strand, within GFF603 at 277.814 kb on - strand, within GFF603 at 277.814 kb on - strand, within GFF603 at 277.814 kb on - strand, within GFF603 at 277.814 kb on - strand, within GFF603 at 277.814 kb on - strand, within GFF603 at 277.814 kb on - strand, within GFF603 at 277.814 kb on - strand, within GFF603 at 277.948 kb on + strand, within GFF603 at 277.948 kb on + strand, within GFF603 at 277.949 kb on - strand, within GFF603 at 277.949 kb on - strand, within GFF603 at 277.949 kb on - strand, within GFF603 at 277.957 kb on + strand, within GFF603 at 277.957 kb on + strand, within GFF603 at 277.957 kb on + strand, within GFF603 at 277.957 kb on + strand, within GFF603 at 277.958 kb on - strand, within GFF603 at 277.993 kb on + strand, within GFF603 at 278.114 kb on - strand, within GFF603 at 278.114 kb on - strand, within GFF603 at 278.126 kb on - strand, within GFF603 at 278.179 kb on + strand, within GFF603 at 278.263 kb on + strand, within GFF603 at 278.291 kb on - strand, within GFF603 at 278.378 kb on - strand at 278.378 kb on - strand at 278.378 kb on - strand at 278.383 kb on + strand at 278.383 kb on + strand at 278.384 kb on - strand at 278.408 kb on - strand at 278.408 kb on - strand at 278.410 kb on + strand at 278.410 kb on + strand at 278.411 kb on - strand at 278.411 kb on - strand at 279.125 kb on - strand, within GFF604 at 279.136 kb on + strand, within GFF604 at 279.136 kb on + strand, within GFF604 at 279.137 kb on - strand, within GFF604 at 279.137 kb on - strand, within GFF604 at 279.137 kb on - strand, within GFF604 at 279.137 kb on - strand, within GFF604 at 279.229 kb on + strand, within GFF604 at 279.229 kb on + strand, within GFF604
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 276,309 + -0.4 276,806 + GFF602 0.57 -0.6 276,836 + GFF602 0.60 +0.4 276,836 + GFF602 0.60 +0.1 276,902 + GFF602 0.68 -0.3 276,903 - GFF602 0.69 +0.8 277,318 + GFF603 0.12 +0.8 277,318 + GFF603 0.12 -0.3 277,423 + GFF603 0.20 -0.1 277,424 - GFF603 0.20 +0.3 277,424 - GFF603 0.20 -0.0 277,466 - GFF603 0.24 +0.0 277,573 + GFF603 0.32 +0.0 277,573 + GFF603 0.32 -0.8 277,670 - GFF603 0.39 -0.3 277,795 + GFF603 0.49 -0.5 277,798 + GFF603 0.49 +0.7 277,798 + GFF603 0.49 -0.1 277,813 + GFF603 0.50 -1.5 277,814 - GFF603 0.50 +0.0 277,814 - GFF603 0.50 +1.0 277,814 - GFF603 0.50 +1.7 277,814 - GFF603 0.50 +0.4 277,814 - GFF603 0.50 +0.3 277,814 - GFF603 0.50 -0.2 277,814 - GFF603 0.50 -0.5 277,948 + GFF603 0.60 -0.3 277,948 + GFF603 0.60 -0.4 277,949 - GFF603 0.60 +0.3 277,949 - GFF603 0.60 +0.8 277,949 - GFF603 0.60 +1.9 277,957 + GFF603 0.61 +0.3 277,957 + GFF603 0.61 +0.0 277,957 + GFF603 0.61 -0.4 277,957 + GFF603 0.61 +0.7 277,958 - GFF603 0.61 -0.3 277,993 + GFF603 0.64 +0.2 278,114 - GFF603 0.73 -0.6 278,114 - GFF603 0.73 +0.1 278,126 - GFF603 0.74 -0.4 278,179 + GFF603 0.78 -0.6 278,263 + GFF603 0.84 +0.9 278,291 - GFF603 0.86 +0.3 278,378 - +1.0 278,378 - -0.3 278,378 - +0.8 278,383 + +0.9 278,383 + +0.3 278,384 - +0.3 278,408 - +0.7 278,408 - -0.4 278,410 + +0.6 278,410 + +0.8 278,411 - -0.0 278,411 - -0.3 279,125 - GFF604 0.66 +0.0 279,136 + GFF604 0.67 +1.7 279,136 + GFF604 0.67 +0.2 279,137 - GFF604 0.67 +0.1 279,137 - GFF604 0.67 +0.4 279,137 - GFF604 0.67 +0.6 279,137 - GFF604 0.67 +0.2 279,229 + GFF604 0.77 +0.4 279,229 + GFF604 0.77 +0.6
Or see this region's nucleotide sequence