Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5819 and GFF5820 are separated by 13 nucleotides GFF5820 and GFF5821 are separated by 110 nucleotides GFF5821 and GFF5822 are separated by 3 nucleotides
GFF5819 - NnrS protein involved in response to NO, at 13,363 to 14,544
GFF5819
GFF5820 - Nitric oxide-dependent regulator DnrN or NorA, at 14,558 to 15,256
GFF5820
GFF5821 - Nitrite-sensitive transcriptional repressor NsrR, at 15,367 to 15,879
GFF5821
GFF5822 - Nitrate/nitrite sensor protein (EC 2.7.3.-), at 15,883 to 17,799
GFF5822
Position (kb) 15
16 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 14.452 kb on + strand at 14.454 kb on - strand at 14.661 kb on + strand, within GFF5820 at 14.661 kb on + strand, within GFF5820 at 14.662 kb on - strand, within GFF5820 at 15.011 kb on - strand, within GFF5820 at 15.291 kb on - strand at 15.391 kb on + strand at 15.724 kb on + strand, within GFF5821 at 15.724 kb on + strand, within GFF5821 at 16.420 kb on + strand, within GFF5822 at 16.420 kb on + strand, within GFF5822 at 16.430 kb on - strand, within GFF5822 at 16.435 kb on + strand, within GFF5822 at 16.435 kb on + strand, within GFF5822 at 16.436 kb on - strand, within GFF5822 at 16.585 kb on + strand, within GFF5822 at 16.586 kb on - strand, within GFF5822 at 16.586 kb on - strand, within GFF5822 at 16.586 kb on - strand, within GFF5822 at 16.661 kb on - strand, within GFF5822 at 16.692 kb on + strand, within GFF5822 at 16.792 kb on + strand, within GFF5822 at 16.792 kb on + strand, within GFF5822
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 14,452 + +0.3 14,454 - +0.4 14,661 + GFF5820 0.15 +0.1 14,661 + GFF5820 0.15 -0.6 14,662 - GFF5820 0.15 +0.6 15,011 - GFF5820 0.65 -0.2 15,291 - +0.3 15,391 + +0.5 15,724 + GFF5821 0.70 -0.3 15,724 + GFF5821 0.70 +0.1 16,420 + GFF5822 0.28 +1.3 16,420 + GFF5822 0.28 -0.1 16,430 - GFF5822 0.29 -0.7 16,435 + GFF5822 0.29 -0.3 16,435 + GFF5822 0.29 -0.1 16,436 - GFF5822 0.29 -0.4 16,585 + GFF5822 0.37 +0.2 16,586 - GFF5822 0.37 +1.3 16,586 - GFF5822 0.37 -0.1 16,586 - GFF5822 0.37 +0.3 16,661 - GFF5822 0.41 +0.9 16,692 + GFF5822 0.42 +7.6 16,792 + GFF5822 0.47 -0.8 16,792 + GFF5822 0.47 -0.2
Or see this region's nucleotide sequence