Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF580

Experiment: Ying_OrganicAcid7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF579 and GFF580 are separated by 46 nucleotidesGFF580 and GFF581 are separated by 216 nucleotides GFF579 - Rod shape-determining protein RodA, at 250,760 to 251,917 GFF579 GFF580 - TldD protein, part of TldE/TldD proteolytic complex, at 251,964 to 253,424 GFF580 GFF581 - 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54), at 253,641 to 254,768 GFF581 Position (kb) 251 252 253 254Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 251.915 kb on + strandat 251.916 kb on - strandat 251.916 kb on - strandat 251.916 kb on - strandat 251.916 kb on - strandat 251.952 kb on + strandat 251.952 kb on + strandat 251.952 kb on + strandat 251.952 kb on + strandat 251.952 kb on + strandat 251.952 kb on + strandat 251.952 kb on + strandat 251.952 kb on + strandat 251.952 kb on + strandat 251.952 kb on + strandat 251.952 kb on + strandat 251.953 kb on - strandat 251.953 kb on - strandat 251.953 kb on - strandat 251.953 kb on - strandat 251.953 kb on - strandat 251.953 kb on - strandat 251.953 kb on - strandat 251.953 kb on - strandat 251.953 kb on - strandat 252.103 kb on - strandat 252.480 kb on + strand, within GFF580at 252.481 kb on - strand, within GFF580at 252.481 kb on - strand, within GFF580at 252.627 kb on + strand, within GFF580at 252.627 kb on + strand, within GFF580at 252.628 kb on - strand, within GFF580at 252.654 kb on + strand, within GFF580at 252.654 kb on + strand, within GFF580at 252.654 kb on + strand, within GFF580at 252.655 kb on - strand, within GFF580at 252.655 kb on - strand, within GFF580at 252.655 kb on - strand, within GFF580at 252.675 kb on + strand, within GFF580at 252.676 kb on - strand, within GFF580at 252.676 kb on - strand, within GFF580at 252.676 kb on - strand, within GFF580at 252.972 kb on + strand, within GFF580at 253.042 kb on - strand, within GFF580at 253.042 kb on - strand, within GFF580at 253.042 kb on - strand, within GFF580at 253.042 kb on - strand, within GFF580at 253.042 kb on - strand, within GFF580at 253.042 kb on - strand, within GFF580at 253.077 kb on + strand, within GFF580at 253.077 kb on + strand, within GFF580at 253.077 kb on + strand, within GFF580at 253.077 kb on + strand, within GFF580at 253.077 kb on + strand, within GFF580at 253.077 kb on + strand, within GFF580at 253.078 kb on - strand, within GFF580at 253.078 kb on - strand, within GFF580at 253.078 kb on - strand, within GFF580at 253.078 kb on - strand, within GFF580at 253.078 kb on - strand, within GFF580at 253.078 kb on - strand, within GFF580at 253.209 kb on + strand, within GFF580at 253.210 kb on - strand, within GFF580at 253.210 kb on - strand, within GFF580at 253.434 kb on + strandat 253.448 kb on + strandat 253.449 kb on - strandat 253.492 kb on + strandat 253.493 kb on - strandat 253.493 kb on - strandat 253.493 kb on - strandat 253.493 kb on - strandat 253.493 kb on - strandat 253.493 kb on - strandat 253.534 kb on + strandat 253.534 kb on + strandat 253.535 kb on - strandat 253.535 kb on - strandat 253.535 kb on - strandat 253.535 kb on - strandat 253.914 kb on + strand, within GFF581at 253.914 kb on + strand, within GFF581at 253.947 kb on + strand, within GFF581at 253.947 kb on + strand, within GFF581at 253.947 kb on + strand, within GFF581at 253.947 kb on + strand, within GFF581at 253.947 kb on + strand, within GFF581at 253.948 kb on - strand, within GFF581at 253.948 kb on - strand, within GFF581at 253.948 kb on - strand, within GFF581at 253.956 kb on - strand, within GFF581at 253.980 kb on + strand, within GFF581at 253.980 kb on + strand, within GFF581at 253.981 kb on - strand, within GFF581at 254.049 kb on + strand, within GFF581at 254.154 kb on + strand, within GFF581at 254.154 kb on + strand, within GFF581at 254.154 kb on + strand, within GFF581at 254.155 kb on - strand, within GFF581at 254.421 kb on + strand, within GFF581at 254.422 kb on - strand, within GFF581

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3
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251,915 + -0.1
251,916 - +1.5
251,916 - -0.5
251,916 - +0.3
251,916 - +0.7
251,952 + -0.8
251,952 + -1.0
251,952 + -0.4
251,952 + +1.3
251,952 + -0.1
251,952 + +3.3
251,952 + -0.5
251,952 + -0.8
251,952 + +1.3
251,952 + +0.4
251,952 + +0.4
251,953 - +0.1
251,953 - -0.0
251,953 - +1.3
251,953 - +0.2
251,953 - +0.3
251,953 - -0.2
251,953 - -1.0
251,953 - -0.5
251,953 - +0.4
252,103 - -1.4
252,480 + GFF580 0.35 -2.1
252,481 - GFF580 0.35 -0.3
252,481 - GFF580 0.35 -1.5
252,627 + GFF580 0.45 -1.9
252,627 + GFF580 0.45 -1.5
252,628 - GFF580 0.45 -2.7
252,654 + GFF580 0.47 -1.7
252,654 + GFF580 0.47 -0.3
252,654 + GFF580 0.47 -0.7
252,655 - GFF580 0.47 -2.0
252,655 - GFF580 0.47 -1.7
252,655 - GFF580 0.47 -1.4
252,675 + GFF580 0.49 -1.3
252,676 - GFF580 0.49 -1.7
252,676 - GFF580 0.49 -1.5
252,676 - GFF580 0.49 -1.9
252,972 + GFF580 0.69 -1.0
253,042 - GFF580 0.74 +0.6
253,042 - GFF580 0.74 +1.3
253,042 - GFF580 0.74 -2.3
253,042 - GFF580 0.74 -0.6
253,042 - GFF580 0.74 +0.1
253,042 - GFF580 0.74 -2.0
253,077 + GFF580 0.76 -1.5
253,077 + GFF580 0.76 -1.9
253,077 + GFF580 0.76 -0.3
253,077 + GFF580 0.76 +0.3
253,077 + GFF580 0.76 -1.6
253,077 + GFF580 0.76 -0.1
253,078 - GFF580 0.76 -2.4
253,078 - GFF580 0.76 -1.5
253,078 - GFF580 0.76 -1.8
253,078 - GFF580 0.76 -0.7
253,078 - GFF580 0.76 -2.8
253,078 - GFF580 0.76 -0.8
253,209 + GFF580 0.85 +0.3
253,210 - GFF580 0.85 -1.4
253,210 - GFF580 0.85 -1.0
253,434 + -0.3
253,448 + +0.7
253,449 - -1.0
253,492 + +0.3
253,493 - -2.3
253,493 - +0.7
253,493 - -0.7
253,493 - +0.2
253,493 - -1.1
253,493 - +1.3
253,534 + -1.5
253,534 + +0.1
253,535 - -2.0
253,535 - -1.5
253,535 - -1.0
253,535 - -0.3
253,914 + GFF581 0.24 -1.5
253,914 + GFF581 0.24 -2.3
253,947 + GFF581 0.27 -0.3
253,947 + GFF581 0.27 -2.8
253,947 + GFF581 0.27 -5.1
253,947 + GFF581 0.27 -0.8
253,947 + GFF581 0.27 -1.2
253,948 - GFF581 0.27 -1.0
253,948 - GFF581 0.27 -1.3
253,948 - GFF581 0.27 -0.3
253,956 - GFF581 0.28 -2.3
253,980 + GFF581 0.30 -3.3
253,980 + GFF581 0.30 -1.3
253,981 - GFF581 0.30 -1.9
254,049 + GFF581 0.36 -4.2
254,154 + GFF581 0.45 -2.5
254,154 + GFF581 0.45 -1.9
254,154 + GFF581 0.45 -2.7
254,155 - GFF581 0.46 -2.6
254,421 + GFF581 0.69 -3.1
254,422 - GFF581 0.69 -2.7

Or see this region's nucleotide sequence