Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5670

Experiment: Ying_OrganicAcid7 rep C; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5668 and GFF5669 are separated by 2 nucleotidesGFF5669 and GFF5670 are separated by 22 nucleotidesGFF5670 and GFF5671 are separated by 5 nucleotides GFF5668 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 2,692,396 to 2,693,145 GFF5668 GFF5669 - Enoyl-CoA hydratase (EC 4.2.1.17), at 2,693,148 to 2,693,984 GFF5669 GFF5670 - Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10), at 2,694,007 to 2,694,492 GFF5670 GFF5671 - putative dioxygenase hydroxylase component, at 2,694,498 to 2,695,790 GFF5671 Position (kb) 2694 2695Strain fitness (log2 ratio) -1 0 1at 2694.008 kb on + strandat 2694.030 kb on - strandat 2694.030 kb on - strandat 2694.108 kb on - strand, within GFF5670at 2694.375 kb on - strand, within GFF5670at 2694.447 kb on - strandat 2694.670 kb on + strand, within GFF5671at 2694.670 kb on + strand, within GFF5671at 2695.382 kb on - strand, within GFF5671

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3
remove
2,694,008 + -0.2
2,694,030 - +0.5
2,694,030 - -0.4
2,694,108 - GFF5670 0.21 -0.8
2,694,375 - GFF5670 0.76 -0.2
2,694,447 - -0.4
2,694,670 + GFF5671 0.13 -0.0
2,694,670 + GFF5671 0.13 +0.6
2,695,382 - GFF5671 0.68 -0.2

Or see this region's nucleotide sequence