Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5586

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
2,599,906	-				-0.4
2,601,288	+				-1.1
2,601,449	+		GFF5587	0.22	+0.4
2,601,449	+		GFF5587	0.22	+0.1
2,601,449	+		GFF5587	0.22	-0.3
2,601,450	-		GFF5587	0.22	+0.2
2,601,586	+		GFF5587	0.40	+0.4
2,601,586	+		GFF5587	0.40	+0.1
2,601,587	-		GFF5587	0.40	-0.0
2,601,862	+		GFF5587	0.75	+0.7
2,601,863	-		GFF5587	0.75	-0.1
2,601,863	-		GFF5587	0.75	+0.0
2,602,119	+				+0.2
2,602,119	+				+0.1
2,602,119	+				-0.1
2,602,194	+		GFF5588	0.16	-0.2
2,602,194	+		GFF5588	0.16	+0.0
2,602,194	+		GFF5588	0.16	-0.2
2,602,194	+		GFF5588	0.16	-0.0
2,602,194	+		GFF5588	0.16	+0.1
2,602,194	+		GFF5588	0.16	+0.6
2,602,194	+		GFF5588	0.16	+0.2
2,602,195	-		GFF5588	0.16	+0.3
2,602,195	-		GFF5588	0.16	+0.2
2,602,195	-		GFF5588	0.16	+0.1
2,602,195	-		GFF5588	0.16	+1.5
2,602,195	-		GFF5588	0.16	+1.8
2,602,195	-		GFF5588	0.16	-0.4