Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5477

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
2,479,172	+		GFF5476	0.71	+0.2
2,479,172	+		GFF5476	0.71	-0.6
2,479,173	-		GFF5476	0.71	-0.4
2,479,508	+				-0.1
2,479,509	-				-0.2
2,479,553	+				+0.9
2,479,836	+		GFF5477	0.68	-0.4
2,479,836	+		GFF5477	0.68	-0.4
2,479,837	-		GFF5477	0.68	-0.0
2,480,067	+		GFF5478	0.11	+0.1
2,480,067	+		GFF5478	0.11	+0.1
2,480,068	-		GFF5478	0.11	+0.6
2,480,172	+		GFF5478	0.22	+0.4
2,480,173	-		GFF5478	0.22	+0.3
2,480,476	-		GFF5478	0.53	-0.1
2,480,476	-		GFF5478	0.53	+0.2
2,480,623	-		GFF5478	0.69	-1.4
2,480,638	-		GFF5478	0.70	+1.2
2,480,673	+		GFF5478	0.74	+0.5
2,480,674	-		GFF5478	0.74	-0.3