Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF543 and GFF544 overlap by 4 nucleotides GFF544 and GFF545 overlap by 6 nucleotides GFF545 and GFF546 are separated by 24 nucleotides
GFF543 - ABC transporter ATP-binding protein, at 212,215 to 213,240
GFF543
GFF544 - hypothetical protein, at 213,237 to 213,419
GFF544
GFF545 - Diaminopimelate epimerase (EC 5.1.1.7), at 213,414 to 214,289
GFF545
GFF546 - Protein of unknown function DUF484, at 214,314 to 214,997
GFF546
Position (kb) 213
214 Strain fitness (log2 ratio) -2
-1
0
1 at 212.291 kb on + strand at 212.291 kb on + strand at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.382 kb on - strand, within GFF543 at 212.382 kb on - strand, within GFF543 at 212.382 kb on - strand, within GFF543 at 212.394 kb on - strand, within GFF543 at 212.552 kb on + strand, within GFF543 at 212.553 kb on - strand, within GFF543 at 212.553 kb on - strand, within GFF543 at 212.553 kb on - strand, within GFF543 at 213.125 kb on + strand, within GFF543 at 213.126 kb on - strand, within GFF543 at 213.126 kb on - strand, within GFF543 at 213.126 kb on - strand, within GFF543 at 213.182 kb on + strand at 213.229 kb on + strand at 213.229 kb on + strand at 213.230 kb on - strand at 213.301 kb on - strand, within GFF544 at 213.323 kb on + strand, within GFF544 at 213.324 kb on - strand, within GFF544 at 214.362 kb on + strand at 214.362 kb on + strand at 214.363 kb on - strand at 214.363 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 212,291 + +0.0 212,291 + -1.4 212,381 + GFF543 0.16 -0.3 212,381 + GFF543 0.16 +0.2 212,381 + GFF543 0.16 -0.7 212,381 + GFF543 0.16 +0.6 212,381 + GFF543 0.16 +0.3 212,381 + GFF543 0.16 +0.2 212,381 + GFF543 0.16 +0.7 212,381 + GFF543 0.16 -0.6 212,381 + GFF543 0.16 +0.5 212,381 + GFF543 0.16 +0.3 212,381 + GFF543 0.16 +1.1 212,381 + GFF543 0.16 -0.3 212,382 - GFF543 0.16 -0.3 212,382 - GFF543 0.16 -0.4 212,382 - GFF543 0.16 +0.1 212,394 - GFF543 0.17 +0.0 212,552 + GFF543 0.33 +0.2 212,553 - GFF543 0.33 -0.1 212,553 - GFF543 0.33 -0.5 212,553 - GFF543 0.33 +0.3 213,125 + GFF543 0.89 +0.3 213,126 - GFF543 0.89 +0.6 213,126 - GFF543 0.89 -0.2 213,126 - GFF543 0.89 +0.8 213,182 + +0.0 213,229 + -0.3 213,229 + -0.5 213,230 - +0.5 213,301 - GFF544 0.35 +0.7 213,323 + GFF544 0.47 -0.7 213,324 - GFF544 0.48 +0.7 214,362 + -1.0 214,362 + -0.7 214,363 - -2.6 214,363 - -1.5
Or see this region's nucleotide sequence