Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5416

Experiment: Ying_OrganicAcid7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5415 and GFF5416 are separated by 212 nucleotidesGFF5416 and GFF5417 overlap by 4 nucleotidesGFF5417 and GFF5418 are separated by 23 nucleotides GFF5415 - Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8), at 2,416,218 to 2,417,939 GFF5415 GFF5416 - SoxH protein, homolog, at 2,418,152 to 2,419,090 GFF5416 GFF5417 - FIG00956261: hypothetical protein, at 2,419,087 to 2,419,851 GFF5417 GFF5418 - ABC transporter permease protein, at 2,419,875 to 2,420,717 GFF5418 Position (kb) 2418 2419 2420Strain fitness (log2 ratio) -1 0 1at 2417.536 kb on + strand, within GFF5415at 2417.925 kb on + strandat 2417.925 kb on + strandat 2419.450 kb on + strand, within GFF5417

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3
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2,417,536 + GFF5415 0.77 -1.1
2,417,925 + -0.6
2,417,925 + -0.6
2,419,450 + GFF5417 0.47 +0.0

Or see this region's nucleotide sequence