Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5354

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
2,355,963	+		GFF5352	0.66	-0.3
2,355,963	+		GFF5352	0.66	-0.1
2,355,963	+		GFF5352	0.66	+0.5
2,355,963	+		GFF5352	0.66	-0.3
2,355,964	-		GFF5352	0.66	+0.8
2,355,964	-		GFF5352	0.66	-0.7
2,355,964	-		GFF5352	0.66	-0.5
2,355,978	+		GFF5352	0.68	-0.3
2,355,978	+		GFF5352	0.68	-0.3
2,355,979	-		GFF5352	0.68	-0.1
2,355,981	+		GFF5352	0.68	-0.8
2,355,981	+		GFF5352	0.68	-0.3
2,355,984	+		GFF5352	0.68	+0.2
2,355,984	+		GFF5352	0.68	-1.1
2,355,985	-		GFF5352	0.68	-0.5
2,355,985	-		GFF5352	0.68	-0.0
2,355,985	-		GFF5352	0.68	-1.8
2,356,290	+				-0.8
2,356,366	+				+0.5
2,356,380	+				+0.7
2,356,665	+		GFF5353	0.61	+1.2
2,356,666	-		GFF5353	0.62	-0.7
2,356,666	-		GFF5353	0.62	-0.0
2,357,566	+		GFF5354	0.55	-0.1
2,357,567	-		GFF5354	0.55	-0.1
2,357,567	-		GFF5354	0.55	-0.9
2,357,567	-		GFF5354	0.55	-0.1
2,357,695	+		GFF5354	0.65	-0.3
2,357,695	+		GFF5354	0.65	-0.2
2,357,695	+		GFF5354	0.65	+0.6
2,357,695	+		GFF5354	0.65	-0.1
2,357,696	-		GFF5354	0.65	-0.4
2,357,696	-		GFF5354	0.65	-0.1
2,357,752	+		GFF5354	0.69	-0.0
2,357,752	+		GFF5354	0.69	-1.0
2,357,839	+		GFF5354	0.76	-0.1
2,357,839	+		GFF5354	0.76	+0.2
2,358,146	-				+0.0
2,358,163	+				-0.5
2,358,163	+				+0.7
2,358,163	+				+0.2
2,358,218	-				-0.3
2,358,218	-				+0.3
2,358,218	-				-0.0
2,358,247	+				+0.1
2,358,248	-				+0.2
2,358,248	-				-0.2
2,358,681	-		GFF5355	0.46	-0.6
2,359,078	-		GFF5355	0.86	+0.5