Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5118

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
2,128,212	+				-0.3
2,128,255	+				+0.1
2,128,482	+		GFF5117	0.22	-1.0
2,128,483	-		GFF5117	0.22	+0.6
2,128,501	-		GFF5117	0.24	+0.0
2,128,545	+		GFF5117	0.29	-1.4
2,128,623	+		GFF5117	0.38	-1.1
2,128,638	+		GFF5117	0.40	-0.4
2,128,639	-		GFF5117	0.40	-0.8
2,128,653	+		GFF5117	0.42	-0.0
2,128,653	+		GFF5117	0.42	+0.2
2,128,653	+		GFF5117	0.42	-1.1
2,128,891	-		GFF5117	0.69	+0.1
2,129,234	+				+0.2
2,129,234	+				+0.3
2,129,234	+				-0.8
2,129,235	-				-0.4
2,129,235	-				-0.1
2,129,358	-		GFF5118	0.18	+0.3
2,129,402	+		GFF5118	0.22	-0.3
2,129,403	-		GFF5118	0.22	-0.2
2,129,403	-		GFF5118	0.22	-0.2
2,129,487	-		GFF5118	0.30	-0.4
2,129,696	+		GFF5118	0.48	-0.6
2,129,697	-		GFF5118	0.49	+1.0
2,129,699	+		GFF5118	0.49	-0.1
2,129,700	-		GFF5118	0.49	+0.2
2,129,700	-		GFF5118	0.49	-0.0
2,129,700	-		GFF5118	0.49	+0.8
2,129,878	-		GFF5118	0.65	-0.9
2,130,081	-		GFF5118	0.83	-0.9
2,130,081	-		GFF5118	0.83	-0.6
2,130,298	+				-0.7
2,130,385	+		GFF5119	0.11	-0.1
2,130,385	+		GFF5119	0.11	-0.4
2,130,385	+		GFF5119	0.11	+2.8
2,130,385	+		GFF5119	0.11	-0.2
2,130,727	+		GFF5119	0.45	-0.7
2,130,728	-		GFF5119	0.45	+0.1
2,130,883	+		GFF5119	0.61	-0.3
2,131,003	+		GFF5119	0.73	+0.8