Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4890

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
1,902,069	-				-1.9
1,902,069	-				-2.1
1,902,074	+				+1.2
1,902,108	-				-0.8
1,902,188	+				-2.7
1,902,188	+				-1.6
1,902,188	+				-0.8
1,902,189	-				-0.4
1,902,189	-				-1.1
1,902,269	+				-0.8
1,902,269	+				-0.4
1,902,270	-				-2.7
1,902,270	-				-2.0
1,902,312	-				-0.4
1,902,312	-				-2.8
1,902,323	+				-2.1
1,902,323	+				-1.4
1,902,324	-				-1.1
1,902,324	-				-1.8
1,902,605	+		GFF4890	0.20	-2.1
1,902,605	+		GFF4890	0.20	-1.8
1,902,605	+		GFF4890	0.20	-1.6
1,902,605	+		GFF4890	0.20	-1.4
1,902,605	+		GFF4890	0.20	-0.4
1,902,605	+		GFF4890	0.20	-2.0
1,902,606	-		GFF4890	0.20	-1.1
1,902,606	-		GFF4890	0.20	-1.4
1,902,606	-		GFF4890	0.20	-0.1
1,902,606	-		GFF4890	0.20	-2.2
1,902,606	-		GFF4890	0.20	-2.0
1,902,684	-		GFF4890	0.23	-2.2
1,902,684	-		GFF4890	0.23	-0.4
1,902,684	-		GFF4890	0.23	-1.6
1,902,686	+		GFF4890	0.23	-0.4
1,902,686	+		GFF4890	0.23	-1.8
1,902,686	+		GFF4890	0.23	-2.4
1,902,686	+		GFF4890	0.23	+0.2
1,902,687	-		GFF4890	0.23	-1.4
1,902,771	-		GFF4890	0.27	-2.1
1,902,947	+		GFF4890	0.33	-1.5
1,902,948	-		GFF4890	0.33	-1.6
1,902,948	-		GFF4890	0.33	-1.6
1,902,950	+		GFF4890	0.33	-1.8
1,902,951	-		GFF4890	0.33	-0.4
1,902,951	-		GFF4890	0.33	-1.6
1,902,989	+		GFF4890	0.35	-1.1
1,902,989	+		GFF4890	0.35	-2.7
1,902,989	+		GFF4890	0.35	-0.8
1,902,990	-		GFF4890	0.35	-0.8
1,903,076	+		GFF4890	0.38	-0.8
1,903,076	+		GFF4890	0.38	-1.6
1,903,076	+		GFF4890	0.38	-1.6
1,903,076	+		GFF4890	0.38	+0.2
1,903,077	-		GFF4890	0.38	-3.3
1,903,079	+		GFF4890	0.38	-2.3
1,903,080	-		GFF4890	0.38	-2.0
1,903,080	-		GFF4890	0.38	+0.2
1,903,080	-		GFF4890	0.38	-1.8
1,903,109	+		GFF4890	0.39	+0.2
1,903,110	-		GFF4890	0.39	-2.1
1,903,110	-		GFF4890	0.39	-0.4
1,903,110	-		GFF4890	0.39	-0.4
1,903,110	-		GFF4890	0.39	-1.8
1,903,130	+		GFF4890	0.40	-0.4
1,903,131	-		GFF4890	0.40	-1.4
1,903,131	-		GFF4890	0.40	-0.8
1,903,131	-		GFF4890	0.40	-2.1
1,903,131	-		GFF4890	0.40	-2.8
1,903,250	+		GFF4890	0.45	-1.4
1,903,250	+		GFF4890	0.45	-0.8
1,903,433	+		GFF4890	0.52	-1.4
1,903,434	+		GFF4890	0.52	-0.4
1,903,754	+		GFF4890	0.64	-1.6
1,904,141	+		GFF4890	0.78	-1.4
1,904,294	+		GFF4890	0.84	-2.0
1,904,295	-		GFF4890	0.84	-1.4
1,904,336	+		GFF4890	0.86	-2.1
1,904,336	+		GFF4890	0.86	-1.1
1,904,337	-		GFF4890	0.86	-0.4
1,904,337	-		GFF4890	0.86	-1.6
1,904,510	+				-1.0
1,904,510	+				-2.6
1,904,511	-				-1.1
1,904,511	-				-2.4
1,904,808	-				+0.2
1,904,808	-				+0.8
1,904,808	-				-0.3
1,904,865	+		GFF4891	0.49	-0.2
1,904,865	+		GFF4891	0.49	-0.3
1,904,865	+		GFF4891	0.49	+0.2
1,904,866	-		GFF4891	0.50	+0.4
1,904,866	-		GFF4891	0.50	-0.7
1,904,866	-		GFF4891	0.50	-1.1
1,904,935	+				-0.2
1,905,118	+				-2.1
1,905,118	+				-1.1
1,905,119	-				+0.2
1,905,119	-				-1.4
1,905,119	-				-1.8
1,905,119	-				-1.1
1,905,364	+		GFF4892	0.16	-3.7
1,905,364	+		GFF4892	0.16	-0.8
1,905,365	-		GFF4892	0.16	-3.0
1,905,365	-		GFF4892	0.16	-3.6
1,905,365	-		GFF4892	0.16	-3.8
1,905,365	-		GFF4892	0.16	-4.5
1,905,475	+		GFF4892	0.21	-3.7
1,905,475	+		GFF4892	0.21	-1.1
1,905,475	+		GFF4892	0.21	-2.1
1,905,476	-		GFF4892	0.21	-0.4
1,905,476	-		GFF4892	0.21	-1.1
1,905,476	-		GFF4892	0.21	-4.0
1,905,575	-		GFF4892	0.24	-2.0
1,905,575	-		GFF4892	0.24	-4.1
1,905,575	-		GFF4892	0.24	-3.2
1,905,628	+		GFF4892	0.27	-3.2
1,905,628	+		GFF4892	0.27	-3.2
1,905,628	+		GFF4892	0.27	-0.8