Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4745

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
1,719,202	+		GFF4744	0.86	+0.2
1,719,203	-		GFF4744	0.86	+2.0
1,719,203	-		GFF4744	0.86	-0.3
1,719,463	+				-1.0
1,719,463	+				+0.3
1,719,463	+				+0.2
1,719,464	-				+0.0
1,719,668	-				+0.1
1,720,274	+		GFF4745	0.12	+0.3
1,720,274	+		GFF4745	0.12	-0.1
1,720,275	-		GFF4745	0.12	-1.0
1,720,349	+		GFF4745	0.14	+0.4
1,720,350	-		GFF4745	0.14	+0.7
1,720,548	-		GFF4745	0.20	-1.6
1,720,548	-		GFF4745	0.20	+0.0
1,720,706	+		GFF4745	0.25	-0.1
1,720,707	-		GFF4745	0.25	+0.7
1,720,805	+		GFF4745	0.28	-0.4
1,720,806	-		GFF4745	0.28	+0.2
1,721,217	-		GFF4745	0.40	+0.3
1,721,217	-		GFF4745	0.40	+0.4
1,721,217	-		GFF4745	0.40	+0.2
1,721,225	+		GFF4745	0.40	-0.3
1,721,225	+		GFF4745	0.40	+0.2
1,721,226	-		GFF4745	0.40	+0.4
1,721,390	+		GFF4745	0.45	+0.1
1,721,432	+		GFF4745	0.46	+0.2
1,721,432	+		GFF4745	0.46	+0.9
1,721,579	+		GFF4745	0.50	+1.0
1,721,846	+		GFF4745	0.58	-0.6
1,721,855	+		GFF4745	0.59	+0.3
1,721,855	+		GFF4745	0.59	-0.3
1,722,524	+		GFF4745	0.78	+0.2
1,722,524	+		GFF4745	0.78	+0.2
1,722,524	+		GFF4745	0.78	-1.0
1,722,525	-		GFF4745	0.78	+0.4
1,722,527	+		GFF4745	0.78	+1.0
1,722,581	+		GFF4745	0.80	-0.4
1,722,582	-		GFF4745	0.80	-0.1
1,722,971	+				+0.0
1,722,971	+				-0.3
1,722,971	+				+0.5
1,722,972	-				+0.7
1,722,972	-				+0.2
1,723,112	+				+0.4
1,723,113	-				+1.2
1,723,113	-				+0.2
1,723,257	+				+1.8
1,723,324	+				-0.4
1,723,324	+				+0.2
1,723,325	-				+0.8
1,723,582	+				-0.2
1,723,582	+				+1.2
1,723,583	-				-0.2
1,723,583	-				+0.2
1,723,940	-		GFF4746	0.11	+0.1
1,723,940	-		GFF4746	0.11	-0.1
1,723,940	-		GFF4746	0.11	+0.4
1,723,940	-		GFF4746	0.11	-0.4
1,723,940	-		GFF4746	0.11	-0.1
1,723,940	-		GFF4746	0.11	-0.2
1,723,984	+		GFF4746	0.11	-0.1
1,723,985	-		GFF4746	0.11	-1.0