Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4451

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
1,378,696	+				+0.6
1,378,696	+				-0.1
1,378,696	+				+0.4
1,378,697	-				+0.2
1,378,741	+				+0.1
1,378,813	+		GFF4450	0.18	+0.2
1,378,814	-		GFF4450	0.18	-1.6
1,378,927	+		GFF4450	0.32	-0.8
1,378,927	+		GFF4450	0.32	+0.2
1,378,927	+		GFF4450	0.32	-0.6
1,378,928	-		GFF4450	0.32	+0.5
1,378,928	-		GFF4450	0.32	+0.6
1,378,928	-		GFF4450	0.32	-0.0
1,379,156	-		GFF4450	0.61	+1.2
1,379,156	-		GFF4450	0.61	-0.2
1,379,159	-		GFF4450	0.61	+0.2
1,379,200	+		GFF4450	0.66	-0.2
1,379,598	+		GFF4451	0.22	-0.9
1,379,722	-		GFF4451	0.41	-1.2
1,379,722	-		GFF4451	0.41	+0.2
1,379,722	-		GFF4451	0.41	-2.4
1,379,847	+		GFF4451	0.61	+1.7
1,379,848	-		GFF4451	0.62	+1.5
1,380,141	+				+0.4
1,380,188	+				+0.5
1,380,188	+				-0.4
1,380,415	-		GFF4452	0.29	+0.3
1,380,493	-		GFF4452	0.40	+0.1
1,380,493	-		GFF4452	0.40	-0.3
1,380,693	+		GFF4452	0.69	-0.2
1,380,693	+		GFF4452	0.69	+0.7
1,380,693	+		GFF4452	0.69	-0.6
1,380,694	-		GFF4452	0.69	-0.2
1,380,694	-		GFF4452	0.69	-0.5
1,380,694	-		GFF4452	0.69	-0.9
1,380,694	-		GFF4452	0.69	+0.5
1,380,759	+		GFF4452	0.78	+0.3