Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4179

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
1,093,760	+		GFF4176	0.82	+0.6
1,093,761	-		GFF4176	0.82	+0.3
1,093,761	-		GFF4176	0.82	-0.0
1,094,328	+				-0.1
1,094,329	+				+0.1
1,094,329	+				+0.2
1,094,842	-				-0.2
1,095,035	+		GFF4179	0.17	+0.1
1,095,173	+		GFF4179	0.23	-0.5
1,095,383	+		GFF4179	0.31	+0.5
1,095,609	-		GFF4179	0.40	-0.2
1,095,768	-		GFF4179	0.47	+0.2
1,095,947	-		GFF4179	0.54	+0.8
1,096,098	-		GFF4179	0.60	+0.2
1,096,098	-		GFF4179	0.60	-0.1
1,096,240	+		GFF4179	0.66	-0.2
1,096,240	+		GFF4179	0.66	+0.1
1,096,350	-		GFF4179	0.71	+0.1
1,096,350	-		GFF4179	0.71	-0.5
1,096,579	+		GFF4179	0.80	+0.4
1,096,751	+		GFF4179	0.87	-0.6
1,096,817	+		GFF4179	0.90	+0.4
1,096,820	+		GFF4179	0.90	-0.2
1,096,820	+		GFF4179	0.90	-0.3
1,096,920	+				-0.6
1,096,920	+				-0.5
1,096,920	+				-0.7
1,097,073	+				+0.5
1,097,353	+		GFF4180	0.39	+1.7
1,097,404	+		GFF4180	0.46	+1.0
1,097,405	-		GFF4180	0.46	+1.2
1,097,405	-		GFF4180	0.46	+0.4
1,097,405	-		GFF4180	0.46	+0.5
1,097,759	-				-0.1
1,097,783	-				-0.5
1,097,783	-				-0.3
1,098,036	+		GFF4181	0.68	+0.7
1,098,037	-		GFF4181	0.68	-1.1