Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4106

Experiment: Ying_OrganicAcid7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 3
1,016,425	+		GFF4105	0.60	-0.4
1,016,426	-		GFF4105	0.60	-0.8
1,016,426	-		GFF4105	0.60	+0.3
1,017,174	+				+0.3
1,017,174	+				-0.1
1,017,174	+				+0.4
1,017,175	-				-2.1
1,017,175	-				-0.2
1,017,223	+				-0.5
1,017,223	+				+0.0
1,017,223	+				+0.6
1,017,225	+				+0.3
1,017,225	+				-0.4
1,017,382	+		GFF4106	0.15	+1.2
1,017,382	+		GFF4106	0.15	+0.3
1,017,382	+		GFF4106	0.15	+0.6
1,017,382	+		GFF4106	0.15	-0.4
1,017,382	+		GFF4106	0.15	-0.2
1,017,382	+		GFF4106	0.15	-0.9
1,017,383	-		GFF4106	0.15	+0.1
1,017,383	-		GFF4106	0.15	+0.1
1,017,383	-		GFF4106	0.15	+0.3
1,017,383	-		GFF4106	0.15	-0.6
1,017,383	-		GFF4106	0.15	+0.7
1,017,383	-		GFF4106	0.15	+0.3
1,017,411	+		GFF4106	0.20	+0.2
1,017,411	+		GFF4106	0.20	-0.2
1,017,411	+		GFF4106	0.20	+0.2
1,017,411	+		GFF4106	0.20	-0.2
1,017,412	-		GFF4106	0.20	-0.3
1,017,412	-		GFF4106	0.20	+1.9
1,017,412	-		GFF4106	0.20	+0.8
1,017,412	-		GFF4106	0.20	-0.3
1,017,412	-		GFF4106	0.20	-0.4
1,017,687	+		GFF4106	0.65	+1.2
1,017,688	-		GFF4106	0.66	-0.7
1,017,780	+		GFF4106	0.81	+0.8
1,017,780	+		GFF4106	0.81	-0.5
1,017,780	+		GFF4106	0.81	-0.8
1,017,781	-		GFF4106	0.81	-1.0
1,017,781	-		GFF4106	0.81	+0.2
1,017,781	-		GFF4106	0.81	+0.3
1,017,781	-		GFF4106	0.81	-0.2
1,017,781	-		GFF4106	0.81	+0.2
1,017,781	-		GFF4106	0.81	-0.0
1,017,781	-		GFF4106	0.81	-0.4
1,017,810	+		GFF4106	0.86	-0.1
1,017,810	+		GFF4106	0.86	+0.1
1,017,810	+		GFF4106	0.86	+0.7
1,017,810	+		GFF4106	0.86	+0.6
1,017,810	+		GFF4106	0.86	+0.0
1,017,811	-		GFF4106	0.86	+0.2
1,017,912	+				-0.2
1,017,912	+				+0.2
1,017,912	+				-0.3
1,017,913	-				-0.2
1,017,950	+				+0.3
1,017,955	+				-0.3
1,017,955	+				+0.6
1,017,955	+				-0.7
1,017,955	+				-0.5
1,017,955	+				-0.4
1,017,955	+				+0.3
1,017,955	+				-0.0
1,017,955	+				+0.2
1,017,956	-				+0.4
1,017,956	-				-0.0
1,017,956	-				-1.1
1,017,956	-				+0.2
1,017,956	-				-1.0
1,017,956	-				-0.2
1,017,972	-				+0.0
1,017,972	-				-0.3
1,017,986	+				+0.8
1,017,986	+				+1.5
1,017,986	+				-1.8
1,017,987	-				+0.4
1,017,987	-				-0.3
1,017,987	-				-0.4
1,018,273	+		GFF4107	0.11	-0.1
1,018,273	+		GFF4107	0.11	-1.6
1,018,273	+		GFF4107	0.11	-2.1
1,018,273	+		GFF4107	0.11	-0.6
1,018,273	+		GFF4107	0.11	-1.0
1,018,273	+		GFF4107	0.11	-1.5
1,018,274	-		GFF4107	0.11	-1.8
1,018,274	-		GFF4107	0.11	-1.4
1,018,309	+		GFF4107	0.13	-1.1
1,018,309	+		GFF4107	0.13	-2.6
1,018,310	-		GFF4107	0.13	-0.8
1,018,310	-		GFF4107	0.13	-0.2
1,018,310	-		GFF4107	0.13	-1.0
1,018,310	-		GFF4107	0.13	-2.5
1,018,310	-		GFF4107	0.13	-1.7
1,018,310	-		GFF4107	0.13	-1.7
1,018,402	+		GFF4107	0.18	-1.8
1,018,402	+		GFF4107	0.18	-2.4
1,018,402	+		GFF4107	0.18	-1.2
1,018,403	-		GFF4107	0.18	-1.3
1,018,403	-		GFF4107	0.18	-0.8
1,018,403	-		GFF4107	0.18	-1.7
1,018,486	+		GFF4107	0.22	-1.4
1,018,486	+		GFF4107	0.22	-1.6
1,018,486	+		GFF4107	0.22	-0.9
1,018,486	+		GFF4107	0.22	-1.5
1,018,486	+		GFF4107	0.22	-0.8
1,018,486	+		GFF4107	0.22	-1.8
1,018,486	+		GFF4107	0.22	-1.4
1,018,487	-		GFF4107	0.22	-1.2
1,018,487	-		GFF4107	0.22	-0.4
1,018,487	-		GFF4107	0.22	-1.2
1,018,487	-		GFF4107	0.22	-2.6
1,018,487	-		GFF4107	0.22	-1.9
1,018,487	-		GFF4107	0.22	-0.8
1,018,487	-		GFF4107	0.22	-0.9
1,018,636	+		GFF4107	0.30	-1.1
1,018,637	-		GFF4107	0.30	-1.3
1,018,861	+		GFF4107	0.41	-1.3
1,018,861	+		GFF4107	0.41	-1.2
1,018,861	+		GFF4107	0.41	-1.7
1,018,862	-		GFF4107	0.41	+0.2
1,018,862	-		GFF4107	0.41	-1.5
1,018,862	-		GFF4107	0.41	-0.4
1,018,862	-		GFF4107	0.41	-1.4