Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4073 and GFF4074 are separated by 2 nucleotides GFF4074 and GFF4075 are separated by 13 nucleotides GFF4075 and GFF4076 are separated by 10 nucleotides GFF4076 and GFF4077 are separated by 40 nucleotides
GFF4073 - Flagellar basal-body rod protein FlgC, at 987,010 to 987,390
GFF4073
GFF4074 - Flagellar basal-body rod modification protein FlgD, at 987,393 to 988,061
GFF4074
GFF4075 - Flagellar hook protein FlgE, at 988,075 to 989,268
GFF4075
GFF4076 - Flagellar basal-body rod protein FlgF, at 989,279 to 990,007
GFF4076
GFF4077 - Flagellar basal-body rod protein FlgG, at 990,048 to 990,836
GFF4077
Position (kb) 988
989
990 Strain fitness (log2 ratio) -1
0
1
2 at 987.095 kb on - strand, within GFF4073 at 987.127 kb on + strand, within GFF4073 at 987.256 kb on + strand, within GFF4073 at 987.256 kb on + strand, within GFF4073 at 987.256 kb on + strand, within GFF4073 at 987.256 kb on + strand, within GFF4073 at 987.257 kb on - strand, within GFF4073 at 987.257 kb on - strand, within GFF4073 at 987.257 kb on - strand, within GFF4073 at 987.257 kb on - strand, within GFF4073 at 987.257 kb on - strand, within GFF4073 at 987.805 kb on + strand, within GFF4074 at 987.806 kb on - strand, within GFF4074 at 987.883 kb on - strand, within GFF4074 at 988.064 kb on - strand at 988.162 kb on + strand at 988.163 kb on - strand at 988.164 kb on - strand at 988.202 kb on - strand, within GFF4075 at 988.202 kb on - strand, within GFF4075 at 988.393 kb on + strand, within GFF4075 at 988.393 kb on + strand, within GFF4075 at 988.429 kb on + strand, within GFF4075 at 988.525 kb on + strand, within GFF4075 at 988.525 kb on + strand, within GFF4075 at 988.526 kb on - strand, within GFF4075 at 988.598 kb on - strand, within GFF4075 at 988.660 kb on + strand, within GFF4075 at 988.699 kb on + strand, within GFF4075 at 988.699 kb on + strand, within GFF4075 at 988.699 kb on + strand, within GFF4075 at 988.700 kb on - strand, within GFF4075 at 988.700 kb on - strand, within GFF4075 at 988.846 kb on + strand, within GFF4075 at 988.846 kb on + strand, within GFF4075 at 988.847 kb on - strand, within GFF4075 at 988.967 kb on - strand, within GFF4075 at 988.967 kb on - strand, within GFF4075 at 989.200 kb on + strand at 989.200 kb on + strand at 989.430 kb on - strand, within GFF4076 at 989.537 kb on + strand, within GFF4076 at 989.538 kb on - strand, within GFF4076 at 989.541 kb on - strand, within GFF4076 at 989.541 kb on - strand, within GFF4076 at 989.573 kb on + strand, within GFF4076 at 989.573 kb on + strand, within GFF4076 at 989.573 kb on + strand, within GFF4076 at 990.183 kb on + strand, within GFF4077
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 987,095 - GFF4073 0.22 -0.1 987,127 + GFF4073 0.31 -0.4 987,256 + GFF4073 0.65 -0.2 987,256 + GFF4073 0.65 +0.1 987,256 + GFF4073 0.65 +0.2 987,256 + GFF4073 0.65 +0.2 987,257 - GFF4073 0.65 -0.2 987,257 - GFF4073 0.65 +0.4 987,257 - GFF4073 0.65 -0.1 987,257 - GFF4073 0.65 -0.8 987,257 - GFF4073 0.65 -0.3 987,805 + GFF4074 0.62 -0.6 987,806 - GFF4074 0.62 +1.2 987,883 - GFF4074 0.73 -0.5 988,064 - +0.8 988,162 + +0.1 988,163 - +1.2 988,164 - -0.2 988,202 - GFF4075 0.11 -0.8 988,202 - GFF4075 0.11 +0.3 988,393 + GFF4075 0.27 -0.1 988,393 + GFF4075 0.27 +2.2 988,429 + GFF4075 0.30 +0.1 988,525 + GFF4075 0.38 +1.9 988,525 + GFF4075 0.38 +0.9 988,526 - GFF4075 0.38 +0.4 988,598 - GFF4075 0.44 +0.2 988,660 + GFF4075 0.49 +0.8 988,699 + GFF4075 0.52 -0.4 988,699 + GFF4075 0.52 -0.4 988,699 + GFF4075 0.52 -0.7 988,700 - GFF4075 0.52 -0.6 988,700 - GFF4075 0.52 -0.0 988,846 + GFF4075 0.65 -0.0 988,846 + GFF4075 0.65 -0.1 988,847 - GFF4075 0.65 -0.6 988,967 - GFF4075 0.75 +0.3 988,967 - GFF4075 0.75 +0.1 989,200 + -0.8 989,200 + -0.2 989,430 - GFF4076 0.21 -0.9 989,537 + GFF4076 0.35 -0.5 989,538 - GFF4076 0.36 -0.5 989,541 - GFF4076 0.36 +0.7 989,541 - GFF4076 0.36 +0.6 989,573 + GFF4076 0.40 +0.6 989,573 + GFF4076 0.40 -0.4 989,573 + GFF4076 0.40 -0.4 990,183 + GFF4077 0.17 -0.6
Or see this region's nucleotide sequence