Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4024

Experiment: Ying_OrganicAcid7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4023 and GFF4024 are separated by 252 nucleotidesGFF4024 and GFF4025 are separated by 4 nucleotides GFF4023 - PUTATIVE METHYLTRANSFERASE, at 938,432 to 939,244 GFF4023 GFF4024 - OsmC family protein, at 939,497 to 940,024 GFF4024 GFF4025 - Transcriptional regulator, AraC family, at 940,029 to 941,009 GFF4025 Position (kb) 939 940 941Strain fitness (log2 ratio) -1 0 1at 938.631 kb on + strand, within GFF4023at 939.022 kb on - strand, within GFF4023at 939.472 kb on + strandat 939.817 kb on + strand, within GFF4024at 939.916 kb on - strand, within GFF4024at 939.916 kb on - strand, within GFF4024at 940.113 kb on + strandat 940.369 kb on - strand, within GFF4025at 940.369 kb on - strand, within GFF4025at 940.408 kb on - strand, within GFF4025at 940.408 kb on - strand, within GFF4025

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3
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938,631 + GFF4023 0.24 +1.2
939,022 - GFF4023 0.73 +0.8
939,472 + +0.1
939,817 + GFF4024 0.61 +0.7
939,916 - GFF4024 0.79 +0.1
939,916 - GFF4024 0.79 +0.3
940,113 + +0.2
940,369 - GFF4025 0.35 -1.0
940,369 - GFF4025 0.35 +0.7
940,408 - GFF4025 0.39 +0.9
940,408 - GFF4025 0.39 +0.7

Or see this region's nucleotide sequence