Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3922

Experiment: Ying_OrganicAcid7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3920 and GFF3921 are separated by 63 nucleotidesGFF3921 and GFF3922 overlap by 8 nucleotidesGFF3922 and GFF3923 are separated by 126 nucleotides GFF3920 - Phosphoenolpyruvate synthase (EC 2.7.9.2), at 833,155 to 835,548 GFF3920 GFF3921 - FIG152265: Sodium:solute symporter associated protein, at 835,612 to 835,887 GFF3921 GFF3922 - Acetate permease ActP (cation/acetate symporter), at 835,880 to 837,943 GFF3922 GFF3923 - Permeases of the major facilitator superfamily, at 838,070 to 839,752 GFF3923 Position (kb) 835 836 837 838Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 834.955 kb on + strand, within GFF3920at 835.414 kb on + strandat 835.414 kb on + strandat 835.414 kb on + strandat 835.414 kb on + strandat 835.415 kb on - strandat 835.572 kb on - strandat 835.572 kb on - strandat 835.572 kb on - strandat 835.572 kb on - strandat 835.575 kb on + strandat 835.575 kb on + strandat 835.575 kb on + strandat 835.575 kb on + strandat 835.816 kb on + strand, within GFF3921at 835.816 kb on + strand, within GFF3921at 835.817 kb on - strand, within GFF3921at 835.898 kb on + strandat 835.899 kb on - strandat 835.940 kb on + strandat 835.940 kb on + strandat 835.940 kb on + strandat 835.940 kb on + strandat 835.940 kb on + strandat 835.940 kb on + strandat 835.941 kb on - strandat 835.941 kb on - strandat 835.941 kb on - strandat 835.941 kb on - strandat 836.048 kb on + strandat 836.048 kb on + strandat 836.066 kb on + strandat 836.067 kb on - strandat 836.067 kb on - strandat 836.093 kb on + strand, within GFF3922at 836.093 kb on + strand, within GFF3922at 836.093 kb on + strand, within GFF3922at 836.093 kb on + strand, within GFF3922at 836.093 kb on + strand, within GFF3922at 836.094 kb on - strand, within GFF3922at 836.094 kb on - strand, within GFF3922at 836.096 kb on + strand, within GFF3922at 836.096 kb on + strand, within GFF3922at 836.096 kb on + strand, within GFF3922at 836.096 kb on + strand, within GFF3922at 836.097 kb on - strand, within GFF3922at 836.097 kb on - strand, within GFF3922at 836.097 kb on - strand, within GFF3922at 836.097 kb on - strand, within GFF3922at 836.097 kb on - strand, within GFF3922at 836.097 kb on - strand, within GFF3922at 836.097 kb on - strand, within GFF3922at 836.126 kb on + strand, within GFF3922at 836.126 kb on + strand, within GFF3922at 836.196 kb on - strand, within GFF3922at 836.196 kb on - strand, within GFF3922at 836.196 kb on - strand, within GFF3922at 836.243 kb on + strand, within GFF3922at 836.243 kb on + strand, within GFF3922at 836.243 kb on + strand, within GFF3922at 836.243 kb on + strand, within GFF3922at 836.244 kb on - strand, within GFF3922at 836.318 kb on + strand, within GFF3922at 836.319 kb on - strand, within GFF3922at 836.333 kb on + strand, within GFF3922at 836.408 kb on + strand, within GFF3922at 836.408 kb on + strand, within GFF3922at 836.408 kb on + strand, within GFF3922at 836.408 kb on + strand, within GFF3922at 836.408 kb on + strand, within GFF3922at 836.409 kb on - strand, within GFF3922at 836.409 kb on - strand, within GFF3922at 836.426 kb on + strand, within GFF3922at 836.427 kb on - strand, within GFF3922at 836.427 kb on - strand, within GFF3922at 836.561 kb on + strand, within GFF3922at 836.561 kb on + strand, within GFF3922at 836.561 kb on + strand, within GFF3922at 836.562 kb on - strand, within GFF3922at 836.609 kb on + strand, within GFF3922at 836.646 kb on - strand, within GFF3922at 837.116 kb on + strand, within GFF3922at 837.116 kb on + strand, within GFF3922at 837.116 kb on + strand, within GFF3922at 837.117 kb on - strand, within GFF3922at 837.117 kb on - strand, within GFF3922at 837.117 kb on - strand, within GFF3922at 837.185 kb on + strand, within GFF3922at 837.186 kb on - strand, within GFF3922at 837.186 kb on - strand, within GFF3922at 837.221 kb on + strand, within GFF3922at 837.221 kb on + strand, within GFF3922at 837.222 kb on - strand, within GFF3922at 837.222 kb on - strand, within GFF3922at 837.222 kb on - strand, within GFF3922at 837.413 kb on + strand, within GFF3922at 837.413 kb on + strand, within GFF3922at 837.413 kb on + strand, within GFF3922at 837.413 kb on + strand, within GFF3922at 837.414 kb on - strand, within GFF3922at 837.414 kb on - strand, within GFF3922at 837.414 kb on - strand, within GFF3922at 837.515 kb on + strand, within GFF3922at 837.515 kb on + strand, within GFF3922at 837.515 kb on + strand, within GFF3922at 837.515 kb on + strand, within GFF3922at 837.516 kb on - strand, within GFF3922at 837.516 kb on - strand, within GFF3922at 837.516 kb on - strand, within GFF3922at 837.516 kb on - strand, within GFF3922at 837.516 kb on - strand, within GFF3922at 837.773 kb on + strandat 837.773 kb on + strandat 837.773 kb on + strandat 837.773 kb on + strandat 837.773 kb on + strandat 837.773 kb on + strandat 837.773 kb on + strandat 837.773 kb on + strandat 837.774 kb on - strandat 837.774 kb on - strandat 837.774 kb on - strandat 837.950 kb on - strandat 837.950 kb on - strandat 838.014 kb on + strandat 838.014 kb on + strandat 838.015 kb on - strandat 838.048 kb on + strandat 838.049 kb on - strandat 838.049 kb on - strandat 838.053 kb on + strandat 838.054 kb on - strandat 838.054 kb on - strandat 838.054 kb on - strandat 838.054 kb on - strandat 838.143 kb on + strandat 838.144 kb on - strandat 838.163 kb on + strandat 838.163 kb on + strandat 838.164 kb on - strandat 838.172 kb on + strandat 838.172 kb on + strandat 838.173 kb on - strandat 838.173 kb on - strandat 838.178 kb on + strandat 838.178 kb on + strandat 838.179 kb on - strandat 838.241 kb on + strand, within GFF3923at 838.241 kb on + strand, within GFF3923at 838.242 kb on - strand, within GFF3923at 838.337 kb on + strand, within GFF3923at 838.338 kb on - strand, within GFF3923at 838.338 kb on - strand, within GFF3923at 838.338 kb on - strand, within GFF3923at 838.403 kb on + strand, within GFF3923at 838.403 kb on + strand, within GFF3923at 838.403 kb on + strand, within GFF3923at 838.403 kb on + strand, within GFF3923at 838.403 kb on + strand, within GFF3923at 838.404 kb on - strand, within GFF3923at 838.404 kb on - strand, within GFF3923at 838.482 kb on - strand, within GFF3923at 838.499 kb on + strand, within GFF3923at 838.499 kb on + strand, within GFF3923at 838.499 kb on + strand, within GFF3923at 838.499 kb on + strand, within GFF3923at 838.499 kb on + strand, within GFF3923at 838.499 kb on + strand, within GFF3923at 838.500 kb on - strand, within GFF3923at 838.500 kb on - strand, within GFF3923at 838.500 kb on - strand, within GFF3923at 838.500 kb on - strand, within GFF3923at 838.500 kb on - strand, within GFF3923at 838.500 kb on - strand, within GFF3923at 838.538 kb on + strand, within GFF3923at 838.539 kb on - strand, within GFF3923at 838.857 kb on - strand, within GFF3923at 838.857 kb on - strand, within GFF3923at 838.872 kb on - strand, within GFF3923

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3
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834,955 + GFF3920 0.75 -2.1
835,414 + -2.5
835,414 + -5.1
835,414 + -2.6
835,414 + -2.1
835,415 - -2.5
835,572 - +0.2
835,572 - -0.1
835,572 - -0.3
835,572 - -0.0
835,575 + +0.2
835,575 + -0.2
835,575 + -0.4
835,575 + -0.4
835,816 + GFF3921 0.74 +0.0
835,816 + GFF3921 0.74 -1.2
835,817 - GFF3921 0.74 -0.4
835,898 + -0.5
835,899 - -0.7
835,940 + -0.7
835,940 + -0.7
835,940 + +0.2
835,940 + -0.6
835,940 + +0.4
835,940 + -0.4
835,941 - -0.4
835,941 - -0.6
835,941 - -1.3
835,941 - +0.1
836,048 + -0.4
836,048 + -0.9
836,066 + -0.0
836,067 - +0.4
836,067 - -0.3
836,093 + GFF3922 0.10 -1.2
836,093 + GFF3922 0.10 -0.4
836,093 + GFF3922 0.10 -0.1
836,093 + GFF3922 0.10 -0.1
836,093 + GFF3922 0.10 -0.1
836,094 - GFF3922 0.10 -1.1
836,094 - GFF3922 0.10 -0.2
836,096 + GFF3922 0.10 -0.4
836,096 + GFF3922 0.10 +0.3
836,096 + GFF3922 0.10 +0.2
836,096 + GFF3922 0.10 -0.5
836,097 - GFF3922 0.11 -1.4
836,097 - GFF3922 0.11 -0.5
836,097 - GFF3922 0.11 +0.8
836,097 - GFF3922 0.11 +0.0
836,097 - GFF3922 0.11 +0.8
836,097 - GFF3922 0.11 -0.6
836,097 - GFF3922 0.11 -0.4
836,126 + GFF3922 0.12 -1.4
836,126 + GFF3922 0.12 +0.1
836,196 - GFF3922 0.15 +0.2
836,196 - GFF3922 0.15 -0.9
836,196 - GFF3922 0.15 -0.9
836,243 + GFF3922 0.18 -1.1
836,243 + GFF3922 0.18 +0.1
836,243 + GFF3922 0.18 -0.1
836,243 + GFF3922 0.18 -0.4
836,244 - GFF3922 0.18 -0.2
836,318 + GFF3922 0.21 -0.6
836,319 - GFF3922 0.21 +0.6
836,333 + GFF3922 0.22 +2.2
836,408 + GFF3922 0.26 -0.1
836,408 + GFF3922 0.26 -1.6
836,408 + GFF3922 0.26 +1.4
836,408 + GFF3922 0.26 +0.6
836,408 + GFF3922 0.26 -0.4
836,409 - GFF3922 0.26 -0.0
836,409 - GFF3922 0.26 -0.3
836,426 + GFF3922 0.26 +1.2
836,427 - GFF3922 0.27 -0.8
836,427 - GFF3922 0.27 +0.1
836,561 + GFF3922 0.33 +1.1
836,561 + GFF3922 0.33 +1.0
836,561 + GFF3922 0.33 +0.3
836,562 - GFF3922 0.33 -0.1
836,609 + GFF3922 0.35 -1.8
836,646 - GFF3922 0.37 +0.8
837,116 + GFF3922 0.60 -0.3
837,116 + GFF3922 0.60 +0.6
837,116 + GFF3922 0.60 +0.1
837,117 - GFF3922 0.60 +0.2
837,117 - GFF3922 0.60 -0.8
837,117 - GFF3922 0.60 -1.0
837,185 + GFF3922 0.63 +0.4
837,186 - GFF3922 0.63 +1.4
837,186 - GFF3922 0.63 -0.8
837,221 + GFF3922 0.65 -0.0
837,221 + GFF3922 0.65 -0.6
837,222 - GFF3922 0.65 +0.1
837,222 - GFF3922 0.65 -0.3
837,222 - GFF3922 0.65 -0.2
837,413 + GFF3922 0.74 +1.8
837,413 + GFF3922 0.74 -1.0
837,413 + GFF3922 0.74 -0.3
837,413 + GFF3922 0.74 +2.2
837,414 - GFF3922 0.74 -0.4
837,414 - GFF3922 0.74 -1.5
837,414 - GFF3922 0.74 -1.0
837,515 + GFF3922 0.79 +0.0
837,515 + GFF3922 0.79 +0.2
837,515 + GFF3922 0.79 -0.4
837,515 + GFF3922 0.79 -0.3
837,516 - GFF3922 0.79 +0.2
837,516 - GFF3922 0.79 -0.5
837,516 - GFF3922 0.79 -0.5
837,516 - GFF3922 0.79 -0.4
837,516 - GFF3922 0.79 -0.1
837,773 + -0.7
837,773 + -2.1
837,773 + +0.9
837,773 + +0.8
837,773 + +0.2
837,773 + -1.3
837,773 + -0.4
837,773 + -0.7
837,774 - -1.6
837,774 - -0.3
837,774 - +0.1
837,950 - -0.6
837,950 - +0.8
838,014 + +0.3
838,014 + -0.4
838,015 - -1.3
838,048 + -1.1
838,049 - -0.5
838,049 - -2.2
838,053 + -0.6
838,054 - -0.3
838,054 - +0.2
838,054 - +1.0
838,054 - -0.7
838,143 + -0.0
838,144 - +0.0
838,163 + -0.4
838,163 + -0.4
838,164 - -0.7
838,172 + +0.0
838,172 + -1.9
838,173 - -0.8
838,173 - +0.4
838,178 + -0.4
838,178 + -0.8
838,179 - -0.0
838,241 + GFF3923 0.10 -0.5
838,241 + GFF3923 0.10 -1.8
838,242 - GFF3923 0.10 -0.4
838,337 + GFF3923 0.16 +0.9
838,338 - GFF3923 0.16 -1.3
838,338 - GFF3923 0.16 +0.8
838,338 - GFF3923 0.16 -0.8
838,403 + GFF3923 0.20 -0.0
838,403 + GFF3923 0.20 -1.6
838,403 + GFF3923 0.20 -0.1
838,403 + GFF3923 0.20 -0.8
838,403 + GFF3923 0.20 +0.1
838,404 - GFF3923 0.20 -1.8
838,404 - GFF3923 0.20 +0.3
838,482 - GFF3923 0.24 -1.1
838,499 + GFF3923 0.25 -0.8
838,499 + GFF3923 0.25 -0.0
838,499 + GFF3923 0.25 -0.3
838,499 + GFF3923 0.25 -1.1
838,499 + GFF3923 0.25 -0.1
838,499 + GFF3923 0.25 -0.1
838,500 - GFF3923 0.26 -1.8
838,500 - GFF3923 0.26 -0.8
838,500 - GFF3923 0.26 +0.6
838,500 - GFF3923 0.26 -0.4
838,500 - GFF3923 0.26 +0.5
838,500 - GFF3923 0.26 -0.5
838,538 + GFF3923 0.28 +0.2
838,539 - GFF3923 0.28 -0.2
838,857 - GFF3923 0.47 -0.7
838,857 - GFF3923 0.47 -0.4
838,872 - GFF3923 0.48 -0.6

Or see this region's nucleotide sequence