Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3831 and GFF3832 overlap by 4 nucleotides GFF3832 and GFF3833 are separated by 36 nucleotides GFF3833 and GFF3834 are separated by 39 nucleotides
GFF3831 - putative 4-hydroxybenzoyl-CoA thioesterase, at 739,458 to 739,910
GFF3831
GFF3832 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 739,907 to 740,629
GFF3832
GFF3833 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 740,666 to 741,013
GFF3833
GFF3834 - Probable transmembrane protein, at 741,053 to 742,465
GFF3834
Position (kb) 740
741
742 Strain fitness (log2 ratio) -2
-1
0
1 at 739.692 kb on + strand, within GFF3831 at 739.692 kb on + strand, within GFF3831 at 739.692 kb on + strand, within GFF3831 at 739.692 kb on + strand, within GFF3831 at 739.692 kb on + strand, within GFF3831 at 739.692 kb on + strand, within GFF3831 at 739.770 kb on + strand, within GFF3831 at 739.771 kb on - strand, within GFF3831 at 739.836 kb on + strand, within GFF3831 at 739.836 kb on + strand, within GFF3831 at 739.836 kb on + strand, within GFF3831 at 739.836 kb on + strand, within GFF3831 at 739.837 kb on - strand, within GFF3831 at 739.837 kb on - strand, within GFF3831 at 740.084 kb on + strand, within GFF3832 at 740.084 kb on + strand, within GFF3832 at 740.084 kb on + strand, within GFF3832 at 740.084 kb on + strand, within GFF3832 at 740.084 kb on + strand, within GFF3832 at 740.085 kb on - strand, within GFF3832 at 740.085 kb on - strand, within GFF3832 at 740.085 kb on - strand, within GFF3832 at 740.085 kb on - strand, within GFF3832 at 740.085 kb on - strand, within GFF3832 at 740.177 kb on + strand, within GFF3832 at 740.189 kb on + strand, within GFF3832 at 740.190 kb on - strand, within GFF3832 at 740.195 kb on + strand, within GFF3832 at 740.195 kb on + strand, within GFF3832 at 740.196 kb on - strand, within GFF3832 at 740.196 kb on - strand, within GFF3832 at 740.198 kb on + strand, within GFF3832 at 740.198 kb on + strand, within GFF3832 at 740.199 kb on - strand, within GFF3832 at 740.222 kb on + strand, within GFF3832 at 740.258 kb on + strand, within GFF3832 at 740.397 kb on - strand, within GFF3832 at 740.397 kb on - strand, within GFF3832 at 740.397 kb on - strand, within GFF3832 at 740.397 kb on - strand, within GFF3832 at 740.627 kb on + strand at 740.693 kb on + strand at 740.693 kb on + strand at 740.694 kb on - strand at 740.756 kb on + strand, within GFF3833 at 740.756 kb on + strand, within GFF3833 at 740.756 kb on + strand, within GFF3833 at 740.757 kb on - strand, within GFF3833 at 740.772 kb on - strand, within GFF3833 at 740.772 kb on - strand, within GFF3833 at 741.159 kb on + strand at 741.338 kb on + strand, within GFF3834 at 741.338 kb on + strand, within GFF3834 at 741.339 kb on - strand, within GFF3834 at 741.716 kb on + strand, within GFF3834 at 741.734 kb on + strand, within GFF3834 at 741.737 kb on + strand, within GFF3834
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 739,692 + GFF3831 0.52 -0.0 739,692 + GFF3831 0.52 -0.1 739,692 + GFF3831 0.52 -1.1 739,692 + GFF3831 0.52 -1.8 739,692 + GFF3831 0.52 +0.5 739,692 + GFF3831 0.52 -0.8 739,770 + GFF3831 0.69 -0.2 739,771 - GFF3831 0.69 +1.2 739,836 + GFF3831 0.83 +0.4 739,836 + GFF3831 0.83 +0.3 739,836 + GFF3831 0.83 -0.6 739,836 + GFF3831 0.83 -0.5 739,837 - GFF3831 0.84 +0.0 739,837 - GFF3831 0.84 -0.4 740,084 + GFF3832 0.24 +0.3 740,084 + GFF3832 0.24 +0.1 740,084 + GFF3832 0.24 +0.1 740,084 + GFF3832 0.24 +0.2 740,084 + GFF3832 0.24 -0.3 740,085 - GFF3832 0.25 +0.4 740,085 - GFF3832 0.25 +1.2 740,085 - GFF3832 0.25 -1.1 740,085 - GFF3832 0.25 -0.1 740,085 - GFF3832 0.25 +1.2 740,177 + GFF3832 0.37 -0.4 740,189 + GFF3832 0.39 -0.9 740,190 - GFF3832 0.39 -0.2 740,195 + GFF3832 0.40 +0.2 740,195 + GFF3832 0.40 +0.1 740,196 - GFF3832 0.40 -0.8 740,196 - GFF3832 0.40 +0.2 740,198 + GFF3832 0.40 +1.2 740,198 + GFF3832 0.40 +0.5 740,199 - GFF3832 0.40 -0.6 740,222 + GFF3832 0.44 -0.1 740,258 + GFF3832 0.49 +0.0 740,397 - GFF3832 0.68 -0.3 740,397 - GFF3832 0.68 +0.0 740,397 - GFF3832 0.68 -0.8 740,397 - GFF3832 0.68 +0.2 740,627 + +0.2 740,693 + +0.1 740,693 + +1.5 740,694 - -0.4 740,756 + GFF3833 0.26 -0.2 740,756 + GFF3833 0.26 -1.8 740,756 + GFF3833 0.26 -0.8 740,757 - GFF3833 0.26 -0.1 740,772 - GFF3833 0.30 +0.1 740,772 - GFF3833 0.30 -1.9 741,159 + -0.8 741,338 + GFF3834 0.20 -0.4 741,338 + GFF3834 0.20 -1.8 741,339 - GFF3834 0.20 -0.7 741,716 + GFF3834 0.47 +1.5 741,734 + GFF3834 0.48 +0.1 741,737 + GFF3834 0.48 -0.8
Or see this region's nucleotide sequence