Experiment: Ying_OrganicAcid7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3724 and GFF3725 are separated by 41 nucleotides GFF3725 and GFF3726 are separated by 36 nucleotides GFF3726 and GFF3727 are separated by 171 nucleotides
GFF3724 - Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16), at 617,455 to 619,050
GFF3724
GFF3725 - hypothetical protein, at 619,092 to 621,872
GFF3725
GFF3726 - hypothetical protein, at 621,909 to 622,412
GFF3726
GFF3727 - Membrane-associated phospholipid phosphatase, at 622,584 to 623,393
GFF3727
Position (kb) 619
620
621
622 Strain fitness (log2 ratio) -1
0
1
2
3 at 618.109 kb on + strand, within GFF3724 at 618.592 kb on + strand, within GFF3724 at 618.592 kb on + strand, within GFF3724 at 618.593 kb on - strand, within GFF3724 at 619.094 kb on - strand at 619.094 kb on - strand at 619.372 kb on + strand, within GFF3725 at 620.345 kb on - strand, within GFF3725 at 620.895 kb on + strand, within GFF3725 at 620.895 kb on + strand, within GFF3725 at 620.895 kb on + strand, within GFF3725 at 620.896 kb on - strand, within GFF3725 at 620.896 kb on - strand, within GFF3725 at 620.896 kb on - strand, within GFF3725 at 620.896 kb on - strand, within GFF3725 at 621.175 kb on + strand, within GFF3725 at 621.176 kb on - strand, within GFF3725 at 621.176 kb on - strand, within GFF3725 at 621.256 kb on + strand, within GFF3725 at 621.298 kb on + strand, within GFF3725 at 621.299 kb on - strand, within GFF3725 at 621.299 kb on - strand, within GFF3725 at 621.538 kb on + strand, within GFF3725 at 621.538 kb on + strand, within GFF3725 at 621.539 kb on - strand, within GFF3725 at 621.625 kb on - strand at 621.625 kb on - strand at 622.249 kb on + strand, within GFF3726 at 622.249 kb on + strand, within GFF3726 at 622.250 kb on - strand, within GFF3726 at 622.460 kb on + strand at 622.461 kb on + strand at 622.461 kb on + strand at 622.461 kb on + strand at 622.586 kb on - strand at 622.789 kb on + strand, within GFF3727 at 622.789 kb on + strand, within GFF3727 at 622.789 kb on + strand, within GFF3727 at 622.804 kb on + strand, within GFF3727 at 622.846 kb on + strand, within GFF3727 at 622.847 kb on - strand, within GFF3727
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3 remove 618,109 + GFF3724 0.41 -0.4 618,592 + GFF3724 0.71 -0.2 618,592 + GFF3724 0.71 -0.0 618,593 - GFF3724 0.71 +0.8 619,094 - -1.1 619,094 - +0.3 619,372 + GFF3725 0.10 +1.0 620,345 - GFF3725 0.45 +0.5 620,895 + GFF3725 0.65 +0.6 620,895 + GFF3725 0.65 -0.1 620,895 + GFF3725 0.65 -0.5 620,896 - GFF3725 0.65 -0.1 620,896 - GFF3725 0.65 -0.3 620,896 - GFF3725 0.65 +0.3 620,896 - GFF3725 0.65 -0.0 621,175 + GFF3725 0.75 +0.3 621,176 - GFF3725 0.75 +1.3 621,176 - GFF3725 0.75 +1.2 621,256 + GFF3725 0.78 -0.8 621,298 + GFF3725 0.79 -0.5 621,299 - GFF3725 0.79 -0.4 621,299 - GFF3725 0.79 +1.7 621,538 + GFF3725 0.88 -1.6 621,538 + GFF3725 0.88 +0.2 621,539 - GFF3725 0.88 +1.2 621,625 - -0.6 621,625 - +0.0 622,249 + GFF3726 0.67 -0.4 622,249 + GFF3726 0.67 +1.2 622,250 - GFF3726 0.68 -0.5 622,460 + +1.0 622,461 + +0.6 622,461 + +2.8 622,461 + -0.5 622,586 - -0.4 622,789 + GFF3727 0.25 -0.1 622,789 + GFF3727 0.25 -0.7 622,789 + GFF3727 0.25 -0.4 622,804 + GFF3727 0.27 +0.4 622,846 + GFF3727 0.32 -0.1 622,847 - GFF3727 0.32 +0.0
Or see this region's nucleotide sequence