Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3572

Experiment: Ying_OrganicAcid7 rep C; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3570 and GFF3571 are separated by 47 nucleotidesGFF3571 and GFF3572 are separated by 109 nucleotidesGFF3572 and GFF3573 are separated by 24 nucleotidesGFF3573 and GFF3574 are separated by 43 nucleotides GFF3570 - Thiol:disulfide interchange protein DsbG precursor, at 458,972 to 459,616 GFF3570 GFF3571 - Probable transmembrane protein, at 459,664 to 460,134 GFF3571 GFF3572 - protein of unknown function DUF1332, at 460,244 to 460,735 GFF3572 GFF3573 - SAM-dependent methyltransferase (EC 2.1.1.-), at 460,760 to 461,374 GFF3573 GFF3574 - hypothetical protein, at 461,418 to 462,638 GFF3574 Position (kb) 460 461Strain fitness (log2 ratio) -2 -1 0 1 2 3at 459.369 kb on + strand, within GFF3570at 459.369 kb on + strand, within GFF3570at 459.369 kb on + strand, within GFF3570at 459.369 kb on + strand, within GFF3570at 459.369 kb on + strand, within GFF3570at 459.369 kb on + strand, within GFF3570at 459.369 kb on + strand, within GFF3570at 459.370 kb on - strand, within GFF3570at 459.370 kb on - strand, within GFF3570at 459.720 kb on - strand, within GFF3571at 459.720 kb on - strand, within GFF3571at 459.764 kb on + strand, within GFF3571at 459.765 kb on - strand, within GFF3571at 459.765 kb on - strand, within GFF3571at 459.797 kb on + strand, within GFF3571at 459.797 kb on + strand, within GFF3571at 459.798 kb on - strand, within GFF3571at 459.798 kb on - strand, within GFF3571at 459.827 kb on + strand, within GFF3571at 459.863 kb on + strand, within GFF3571at 459.863 kb on + strand, within GFF3571at 459.864 kb on - strand, within GFF3571at 459.864 kb on - strand, within GFF3571at 459.864 kb on - strand, within GFF3571at 459.865 kb on + strand, within GFF3571at 459.866 kb on + strand, within GFF3571at 459.866 kb on + strand, within GFF3571at 459.867 kb on - strand, within GFF3571at 459.867 kb on - strand, within GFF3571at 459.867 kb on - strand, within GFF3571at 459.869 kb on + strand, within GFF3571at 459.869 kb on + strand, within GFF3571at 459.870 kb on - strand, within GFF3571at 459.870 kb on - strand, within GFF3571at 459.870 kb on - strand, within GFF3571at 459.879 kb on - strand, within GFF3571at 459.879 kb on - strand, within GFF3571at 459.984 kb on - strand, within GFF3571at 460.302 kb on + strand, within GFF3572at 460.302 kb on + strand, within GFF3572at 460.302 kb on + strand, within GFF3572at 460.302 kb on + strand, within GFF3572at 460.302 kb on + strand, within GFF3572at 460.302 kb on + strand, within GFF3572at 460.303 kb on - strand, within GFF3572at 460.474 kb on - strand, within GFF3572at 460.953 kb on + strand, within GFF3573at 460.962 kb on + strand, within GFF3573at 460.963 kb on - strand, within GFF3573at 460.963 kb on - strand, within GFF3573at 461.061 kb on + strand, within GFF3573at 461.061 kb on + strand, within GFF3573at 461.061 kb on + strand, within GFF3573at 461.061 kb on + strand, within GFF3573at 461.061 kb on + strand, within GFF3573at 461.062 kb on - strand, within GFF3573at 461.062 kb on - strand, within GFF3573at 461.062 kb on - strand, within GFF3573at 461.062 kb on - strand, within GFF3573at 461.062 kb on - strand, within GFF3573at 461.062 kb on - strand, within GFF3573

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 3
remove
459,369 + GFF3570 0.62 +0.5
459,369 + GFF3570 0.62 -1.1
459,369 + GFF3570 0.62 +0.2
459,369 + GFF3570 0.62 -0.5
459,369 + GFF3570 0.62 +0.5
459,369 + GFF3570 0.62 +0.1
459,369 + GFF3570 0.62 -1.9
459,370 - GFF3570 0.62 -0.3
459,370 - GFF3570 0.62 -0.1
459,720 - GFF3571 0.12 -0.8
459,720 - GFF3571 0.12 +0.1
459,764 + GFF3571 0.21 +0.5
459,765 - GFF3571 0.21 +0.8
459,765 - GFF3571 0.21 -0.4
459,797 + GFF3571 0.28 +0.8
459,797 + GFF3571 0.28 -0.4
459,798 - GFF3571 0.28 -0.2
459,798 - GFF3571 0.28 -0.8
459,827 + GFF3571 0.35 -0.1
459,863 + GFF3571 0.42 +0.5
459,863 + GFF3571 0.42 -0.1
459,864 - GFF3571 0.42 -0.1
459,864 - GFF3571 0.42 -0.2
459,864 - GFF3571 0.42 +0.2
459,865 + GFF3571 0.43 -0.4
459,866 + GFF3571 0.43 -0.8
459,866 + GFF3571 0.43 +0.6
459,867 - GFF3571 0.43 +0.2
459,867 - GFF3571 0.43 -0.4
459,867 - GFF3571 0.43 -0.4
459,869 + GFF3571 0.44 -0.8
459,869 + GFF3571 0.44 -0.2
459,870 - GFF3571 0.44 -0.4
459,870 - GFF3571 0.44 +0.4
459,870 - GFF3571 0.44 -0.4
459,879 - GFF3571 0.46 -0.0
459,879 - GFF3571 0.46 -0.4
459,984 - GFF3571 0.68 +0.1
460,302 + GFF3572 0.12 -0.4
460,302 + GFF3572 0.12 +0.6
460,302 + GFF3572 0.12 -1.1
460,302 + GFF3572 0.12 -0.7
460,302 + GFF3572 0.12 +0.9
460,302 + GFF3572 0.12 -0.3
460,303 - GFF3572 0.12 +1.2
460,474 - GFF3572 0.47 -1.0
460,953 + GFF3573 0.31 +0.5
460,962 + GFF3573 0.33 +0.3
460,963 - GFF3573 0.33 -0.3
460,963 - GFF3573 0.33 +0.4
461,061 + GFF3573 0.49 +0.2
461,061 + GFF3573 0.49 +0.5
461,061 + GFF3573 0.49 +0.1
461,061 + GFF3573 0.49 +0.7
461,061 + GFF3573 0.49 +0.9
461,062 - GFF3573 0.49 -0.1
461,062 - GFF3573 0.49 +1.6
461,062 - GFF3573 0.49 -0.1
461,062 - GFF3573 0.49 +0.4
461,062 - GFF3573 0.49 +3.2
461,062 - GFF3573 0.49 -1.4

Or see this region's nucleotide sequence